BO23913.complete Sequence
1135 bp assembled on 2010-04-15
GenBank Submission: KX796486
> BO23913.complete
GAAGTTATCAGTCGACATGTTCCCGCAACGCAGCTCGGAGCTGTACCGCA
CTCCGGTGACCCACCAGCCTCCGCCGGCACTGGAGCTGGCCGGGAATCTG
GAGTACCCGAACCTCAACATTGCGGACCTAAACGCGCGATTGGAAAACCT
TTCGCCGCGACTGCACGACTGCTGGGACAGCATCGCTATCAATGATCACA
ACCACCTGGCCCTGGCCACAAACCGACGCGAAGGACGCCAATGGTGGGGC
ATGTTGTTCGGCTACGGACGCGACCAGATGCACCACATGAGCGTGGACTC
GGCGAACTTCAAGCTGCAGGCGGAGCACACGGTGAACATTGTGCGCTACG
CTGAGGATGATTTCCTACTGGTGGCCCTTGGGGATACCCGACTCCAGGCC
TGGTCCACATACTCCAAGGTGCGAGATTCTCAGTCGCCATACTGCCTCTT
CCTCGTGGGCGAGTCCAGTGCGCATCCCACACCCATCAGCCAACTGAGCG
TCTTCAAGGCGGATCCCCGCACTGCCGTTTCGGGCTCAGCGGACAGTACC
CTCAATGTCTGGGATCTCTCGGGCGCCGATATGGTGAGCACCTACAGATC
GCGCTCCTCGCATACCGACAAGTTGACTGGCCTGGCCACACCCGCAGCTT
CAGTCGATAAATTTGTGACCTGTGATCGTGGCGGCTGTGCCCGCCTTTGG
GATGTCCGGGCAGCGGCTCCATCTTCCACGTGCCTCTATGCGGATGCCAG
CCACGTGCTGAGCTTCACCAGTGCCGCCTGGGCAGCTGCCTCGGAGCTGC
AGGGTGACAATCACATCTATCTCGGGGACTACGACGGCAAAGTTCATACT
CTGGACATTCGAGTGCCACGAAAACTGGCGGAAACCAGGGAATACTTCGA
CAAGGGCCATGTCGCCCAGTTATTAATCAATGGGCCCCATCTGGCTGCGA
TGAGCAATTTGCCCGCCTCCGTGAAAGTGGCCAATGTGCAGGCGGGCCAT
GAGTTCATCTACACGCACCAGGACACCCATTCTCGCCTAACTGATGCCGT
TTGGACCGATGATAGCACCCTCATCACCATTGGACATGGCCGCAAAATGG
TGACGCACGCGATCAAAGCAAGCTTTCTAGACCAT
BO23913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vls-RA | 1104 | CG10728-PA | 1..1101 | 17..1117 | 5460 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vls-RA | 1310 | CG10728-RA | 82..1182 | 17..1117 | 5460 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20065057..20065598 | 558..17 | 2695 | 99.8 | Minus |
| 2L | 23513712 | 2L | 20064624..20065001 | 934..557 | 1875 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20064389..20064573 | 1117..933 | 910 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:29:46 has no hits.
BO23913.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:46 Download gff for
BO23913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 83..1178 | 22..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:19 Download gff for
BO23913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 87..1182 | 22..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:19 Download gff for
BO23913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 87..1182 | 22..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:19 Download gff for
BO23913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20064625..20065001 | 557..933 | 99 | <- | Minus |
| 2L | 20064387..20064572 | 934..1119 | 98 | <- | Minus |
| 2L | 20065059..20065593 | 22..556 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:19 Download gff for
BO23913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20064387..20064572 | 934..1119 | 98 | <- | Minus |
| arm_2L | 20064625..20065001 | 557..933 | 99 | <- | Minus |
| arm_2L | 20065059..20065593 | 22..556 | 99 | | Minus |
BO23913.pep Sequence
Translation from 16 to 1135
> BO23913.pep
MFPQRSSELYRTPVTHQPPPALELAGNLEYPNLNIADLNARLENLSPRLH
DCWDSIAINDHNHLALATNRREGRQWWGMLFGYGRDQMHHMSVDSANFKL
QAEHTVNIVRYAEDDFLLVALGDTRLQAWSTYSKVRDSQSPYCLFLVGES
SAHPTPISQLSVFKADPRTAVSGSADSTLNVWDLSGADMVSTYRSRSSHT
DKLTGLATPAASVDKFVTCDRGGCARLWDVRAAAPSSTCLYADASHVLSF
TSAAWAAASELQGDNHIYLGDYDGKVHTLDIRVPRKLAETREYFDKGHVA
QLLINGPHLAAMSNLPASVKVANVQAGHEFIYTHQDTHSRLTDAVWTDDS
TLITIGHGRKMVTHAIKASFLDH
BO23913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vls-PA | 367 | CG10728-PA | 1..367 | 1..367 | 1944 | 100 | Plus |
