BO23914.complete Sequence
961 bp assembled on 2011-02-07
GenBank Submission: KX799641
> BO23914.complete
GAAGTTATCAGTCGACATGTCAAAGAATAACGGAAAGGGCGCCAAAGGCG
AATTCGAATTCCCGCAGCCAGCGAAGAAGCAAACCTTCTCGGAAATGATC
TACAATCCCCAGGAAGGCACCTTCTTCGGACGCACCGGAAAAAGTTGGAG
TCAGCTACTGCTGTTCTACACAATCTTCTACATCGTTCTGGCCGCCCTCT
TCACCATTTGCATGCAGGGTCTTCTGTCCACCATCAGCGATACGGAACCC
AAGTGGAAGCTGCAAGACTCGCTGATAGGCACCAATCCCGGCCTGGGATT
CCGTCCATTGAGTGAGCAGACCGAGCGAGGATCGGTGATCGCCTTCGATG
GCAAGAAACCGGCCGAGAGCGATTACTGGATCGAGCTGATTGATGACTTC
CTCCGGGACTACAACCACACCGAGGGACGGGATATGAAGCACTGCGGCTT
CGGTCAGGTCCTCGAACCCACGGATGTGTGTGTGGTGAACACGGATCTGT
TTGGCGGCTGTTCCAAGGCCAATAACTATGGCTACAAGACGAACCAGCCC
TGCATATTCTTGAAGCTGAATAAGATCTTTGGCTGGATTCCGGAAGTGTA
CGATAAGGAGGAGAAGGATATGCCTGATGATCTGAAAAAGGTGATCAATG
AGACGAAAACGGAGGAGCGGCAGCAAGTCTGGGTGAGCTGCAACGGTCAC
TTGGGCAAGGACAAGGAGAACTTCCAGAACATCCGCTACTTCCCCAGCCA
AGGGTTCCCAAGCTACTACTACCCGTTCCTGAACCAGCCGGGTTACCTGA
GTCCGCTGGTGGCCGTGCAGTTCAACTCCCCGCCCAAGGGTCAAATGCTG
GACGTGGAGTGCCGTGCCTGGGCCAAGAATATTCAGTACAGTGGCAGTGT
CCGCGATCGCAAGGGCTCCGTGACCTTCCAGATCCTCCTGGACGCAAGCT
TTCTAGACCAT
BO23914.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv1-RB | 930 | CG9258-PB | 1..927 | 17..943 | 4635 | 100 | Plus |
| nrv1-RA | 930 | CG9258-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv1-RB | 1926 | CG9258-RB | 448..1374 | 17..943 | 4635 | 100 | Plus |
| nrv1-RA | 2195 | CG9258-RA | 448..1374 | 17..943 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6779376..6779653 | 943..666 | 1390 | 100 | Minus |
| 2L | 23513712 | 2L | 6779712..6779972 | 667..407 | 1305 | 100 | Minus |
| 2L | 23513712 | 2L | 6780032..6780289 | 407..150 | 1290 | 100 | Minus |
| 2L | 23513712 | 2L | 6786280..6786414 | 151..17 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:14:16 has no hits.
BO23914.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 11:45:47 Download gff for
BO23914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv1-RA | 443..1369 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:26 Download gff for
BO23914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv1-RA | 448..1374 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:10 Download gff for
BO23914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv1-RA | 448..1374 | 17..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:10 Download gff for
BO23914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6779374..6779651 | 668..945 | 99 | <- | Minus |
| 2L | 6779712..6779971 | 408..667 | 100 | <- | Minus |
| 2L | 6780032..6780289 | 150..407 | 100 | <- | Minus |
| 2L | 6786282..6786414 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:26 Download gff for
BO23914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6779712..6779971 | 408..667 | 100 | <- | Minus |
| arm_2L | 6786282..6786414 | 17..149 | 100 | | Minus |
| arm_2L | 6780032..6780289 | 150..407 | 100 | <- | Minus |
| arm_2L | 6779374..6779651 | 668..945 | 99 | <- | Minus |
BO23914.pep Sequence
Translation from 16 to 961
> BO23914.pep
MSKNNGKGAKGEFEFPQPAKKQTFSEMIYNPQEGTFFGRTGKSWSQLLLF
YTIFYIVLAALFTICMQGLLSTISDTEPKWKLQDSLIGTNPGLGFRPLSE
QTERGSVIAFDGKKPAESDYWIELIDDFLRDYNHTEGRDMKHCGFGQVLE
PTDVCVVNTDLFGGCSKANNYGYKTNQPCIFLKLNKIFGWIPEVYDKEEK
DMPDDLKKVINETKTEERQQVWVSCNGHLGKDKENFQNIRYFPSQGFPSY
YYPFLNQPGYLSPLVAVQFNSPPKGQMLDVECRAWAKNIQYSGSVRDRKG
SVTFQILLDASFLDH
BO23914.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv1-PB | 309 | CG9258-PB | 1..309 | 1..309 | 1679 | 100 | Plus |
| nrv1-PA | 309 | CG9258-PA | 1..309 | 1..309 | 1679 | 100 | Plus |
| nrv2-PG | 323 | CG9261-PG | 20..323 | 16..309 | 654 | 42.2 | Plus |
| nrv2-PF | 323 | CG9261-PF | 20..323 | 16..309 | 654 | 42.2 | Plus |
| nrv2-PC | 323 | CG9261-PC | 20..323 | 16..309 | 654 | 42.2 | Plus |
