Clone BO23916 Report

Search the DGRC for BO23916

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:239
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG4004-RA
Protein status:BO23916.pep: Imported from assembly
Sequenced Size:991

Clone Sequence Records

BO23916.complete Sequence

991 bp assembled on 2010-04-15

GenBank Submission: KX796225

> BO23916.complete
GAAGTTATCAGTCGACATGTCCCAGATGGGCGGCACATGCTTGTACGATG
AGCCCGAAATCATGGAGGAGTTCATCAGCTGTTATCAGTATTTCACCGCC
CTGTGGGACAGCAGCAGTCCCGATTATCTATCGAAACAGAAAAAGGAGCC
CGGCTATCAGGAGCTATTGAAGATACTGCGACGCGTTAATAGCAACTGTT
CGATTCAGGATGTTAAGCGAAAGATAAACTCGCTGCGTTGCTGCTATCGT
CGTGAATTCAAAAAGGTACAGGAATCGGTCAATGGCTACCAGACGCGTCT
CTGGTGGTTTCATCTGATGGATTTCCTCAAGCCGGTACTCAACATACAAT
CGCCGGCCAGGGTGAAATCCGAGAACGTGGACGATAGTCTCGACGAGACC
AGCATTCAGGATGTTGACATTATGTCTGATGCCTTTCCACACGAAGAGGA
TATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAACCGGAACCCG
AGCCTGATAACGATCCCGAATTGGATAACATGGATGATCATGTTGATGAT
TATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATGGCTATCAGCA
GCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCGCAGACTTCGG
ATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAGTAGCAATGAC
ACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGGAGACTTCGAA
TAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGAGACAGAAAGC
ATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAAACGGATGGCC
AGCCACTTCCGGCGTATGCGTCCGGATCAGCGACTTTTCGCCGAACGGAT
CATCAGCGAGGTGTTGGTCTATGGCCGAATGAATCGCCTTTCGTTCGAGA
CCCAATTTAGTATGGGTCATAAAGCAAGCTTTCTAGACCAT

BO23916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-RE 960 CG4004-PE 1..957 17..973 4755 99.8 Plus
CG4004-RD 960 CG4004-PD 1..957 17..973 4755 99.8 Plus
CG4004-RA 960 CG4004-PA 1..957 17..973 4755 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-RE 2237 CG4004-RE 346..1302 17..973 4755 99.8 Plus
CG4004-RD 1985 CG4004-RD 94..1050 17..973 4755 99.8 Plus
CG4004-RA 3403 CG4004-RA 94..1050 17..973 4755 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12746864..12747432 405..973 2815 99.6 Plus
X 23542271 X 12744557..12744950 17..410 1970 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:33:04 has no hits.

BO23916.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:58 Download gff for BO23916.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RA 92..1048 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:06 Download gff for BO23916.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RA 94..1050 17..975 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:33 Download gff for BO23916.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RA 94..1050 17..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:33 Download gff for BO23916.complete
Subject Subject Range Query Range Percent Splice Strand
X 12744557..12744949 17..409 100 -> Plus
X 12746869..12747432 410..975 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:06 Download gff for BO23916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12638590..12638982 17..409 100 -> Plus
arm_X 12640902..12641465 410..975 99   Plus

BO23916.pep Sequence

Translation from 16 to 991

> BO23916.pep
MSQMGGTCLYDEPEIMEEFISCYQYFTALWDSSSPDYLSKQKKEPGYQEL
LKILRRVNSNCSIQDVKRKINSLRCCYRREFKKVQESVNGYQTRLWWFHL
MDFLKPVLNIQSPARVKSENVDDSLDETSIQDVDIMSDAFPHEEDMLRLD
AVGDGDVEPEPEPDNDPELDNMDDHVDDYRNNSSAGSIKNNGYQQHTVSS
HQQHNGESQTSDKSGRRIRNRRRRSSNDTDYVEAARKRRNVETSNRDRDW
HRERDRERDRKHESDSEYECELIGKRMASHFRRMRPDQRLFAERIISEVL
VYGRMNRLSFETQFSMGHKASFLDH

BO23916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-PE 319 CG4004-PE 1..319 1..319 1702 100 Plus
CG4004-PD 319 CG4004-PD 1..319 1..319 1702 100 Plus
CG4004-PA 319 CG4004-PA 1..319 1..319 1702 100 Plus
CG4004-PB 339 CG4004-PB 4..339 29..319 1123 67.6 Plus
CG4004-PC 304 CG4004-PC 115..304 130..319 1003 98.9 Plus