Clone BO23917 Report

Search the DGRC for BO23917

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:239
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL15-RA
Protein status:BO23917.pep: Imported from assembly
Sequenced Size:892

Clone Sequence Records

BO23917.complete Sequence

892 bp assembled on 2010-04-15

GenBank Submission: KX799499

> BO23917.complete
GAAGTTATCAGTCGACATGGCACACCTGCGGGAGACCTCGGACAAGGCGC
TGAAGCTGTTGCGTACTTTACCGCGCGTTCAAATCGGCAATCTGCGACCA
AATCCAAACTCAAAACAGAATGACAAGCGCGGCAGGGCACAACACGGAGG
AGATAAGCACGGAGCGGGCAACAAGGGATCCGGTCAGCGGCAGAACTTCA
TGCGATTGGGCTATGAAACGGGCAATCAGCCCTTCTACTTGAGATTTCCC
TACGAGCCCTACTACAAGGGACACCACCTAAAGCGCCAGTATCCGCCCAT
TTCGCTGCTCCAACTGCAAGTGCTCATCGACACGAACCGCATAGACATCA
GCCAGCCCATCGACATCAGCACGCTGTGTAACTCTGGCCTCCTGAAACTG
AAACCCGCTGAAATGGAGTACGGTTTCCAGCTGACGGACGATGGGCTGGA
CAATTTCCAGGCTAAGATCAACATTGAGGTGCAGCACGCCAGCGAGGCGG
TCATAGCGGCCATAGAGAAGAACGGCGGTGTAATCCGTACGGCCTATTAC
GATCCACGCAGCCTTCACATGCTGGCCAATCCGAAGAAGTGGTTCGAAAA
GGGAGTACCTATTCCTAGCCGCATGCTGCCGCCCCAGGATGCAGTGGACT
ACTATACGGATCCCAAGAATCGCGGCTACCTGGCCAATCCCGAGGCGATC
AGCCAGGACCGCCTAGTTCTGGCCCAGAAGTACGGCTATCAGCTGCCCAA
AATTGAGGAAGATTCCGCGTACGAGATGCTCACCACAGCGAAGGATCCAA
GGCAAGTATTCTACGGCCTGGAACCCGGCTGGCTGATCAACATAGTGGAC
AAAACGATCATTAAGCGCAAGCAAGCAAGCTTTCTAGACCAT

BO23917.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL15-RA 861 CG5219-PA 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL15-RA 1029 CG5219-RA 120..977 17..874 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20435162..20435914 874..122 3765 100 Minus
3L 28110227 3L 20435985..20436090 122..17 530 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:47:18 has no hits.

BO23917.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:59 Download gff for BO23917.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL15-RA 82..939 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:47 Download gff for BO23917.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL15-RA 120..977 17..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:57 Download gff for BO23917.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL15-RA 120..977 17..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:57 Download gff for BO23917.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20435160..20435914 122..876 99 <- Minus
3L 20435986..20436090 17..121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:47 Download gff for BO23917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20428260..20429014 122..876 99 <- Minus
arm_3L 20429086..20429190 17..121 100   Minus

BO23917.pep Sequence

Translation from 16 to 892

> BO23917.pep
MAHLRETSDKALKLLRTLPRVQIGNLRPNPNSKQNDKRGRAQHGGDKHGA
GNKGSGQRQNFMRLGYETGNQPFYLRFPYEPYYKGHHLKRQYPPISLLQL
QVLIDTNRIDISQPIDISTLCNSGLLKLKPAEMEYGFQLTDDGLDNFQAK
INIEVQHASEAVIAAIEKNGGVIRTAYYDPRSLHMLANPKKWFEKGVPIP
SRMLPPQDAVDYYTDPKNRGYLANPEAISQDRLVLAQKYGYQLPKIEEDS
AYEMLTTAKDPRQVFYGLEPGWLINIVDKTIIKRKQASFLDH

BO23917.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL15-PA 286 CG5219-PA 1..286 1..286 1514 100 Plus