BO23918.complete Sequence
733 bp assembled on 2010-04-15
GenBank Submission: KX796264
> BO23918.complete
GAAGTTATCAGTCGACATGAATTTACCAGCGAAAATGGACGTGGAAAAGG
ATAAGCTTCGCCAGATGCACTGCGAATTCAATCCCTTGTCGCGTTGCGAC
GGATCCGTGATGTACAGCCAGGGTGCTACAGGTCTCATAGGCGCAGTTCT
CGGCCCCATCGAGGTGAAGACCCAAAATCTGAGCATAGATGGCAGCTACT
TGGAGTGTAACTACCGACCAAAAGCGGGCCTGCCGCAGGTTACCGATCGG
ATTCGGGAGGCGGCCATTCGGGATGTGCTGGAACTGGCCCTCCTGTCGGA
GGCTCATCCGCGCTCCAAGATGTCCGTGCAGATCCAGGAGCTGGAAGATC
GTGGCAGTATTGATGCCTGCGCCGTAAATTGCGCCTGCCTAGCCATGCTC
ATCGGAGGCCTGCCTTTAAAGTATAGCTTTGCGGCTGTCCACGCCATCAT
CAACGAGCAGGGCGAGTATGTGCTAGATCCGGACCAAAGTGAAACCCTCC
ACCAGCGCGCCAGTTTTACATTCGCCTTTGATTCTGTGGAAGGAAACCTT
CTGTTGATCCAGACAAAGGGCTCTTTCAAAATAGCCCAGTTCAATGATAT
TGAGTGCCTATGCCTGGCTGCCAGTGCCGAGATCTTTCAGTTCTATCGCA
ACCAGGTTGCAAAGTATCATGGCAGGAGTGAGGCGACGGCTAAGAAGGAG
GACGTCAATGAGACGGCAAGCTTTCTAGACCAT
BO23918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp46-RA | 702 | CG4043-PA | 1..699 | 17..715 | 3450 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp46-RA | 819 | CG4043-RA | 73..771 | 17..715 | 3450 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10413838..10414194 | 359..715 | 1755 | 99.4 | Plus |
| 3R | 32079331 | 3R | 10413543..10413779 | 122..358 | 1170 | 99.6 | Plus |
| 3R | 32079331 | 3R | 10413373..10413480 | 17..124 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:59:25 has no hits.
BO23918.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:02 Download gff for
BO23918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp46-RA | 73..771 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:34 Download gff for
BO23918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp46-RA | 73..771 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:27 Download gff for
BO23918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp46-RA | 73..771 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:27 Download gff for
BO23918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10413544..10413779 | 123..358 | 99 | -> | Plus |
| 3R | 10413838..10414194 | 359..717 | 98 | | Plus |
| 3R | 10413373..10413478 | 17..122 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:34 Download gff for
BO23918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6239095..6239200 | 17..122 | 100 | -> | Plus |
| arm_3R | 6239266..6239501 | 123..358 | 99 | -> | Plus |
| arm_3R | 6239560..6239916 | 359..717 | 98 | | Plus |
BO23918.pep Sequence
Translation from 16 to 733
> BO23918.pep
MNLPAKMDVEKDKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEV
KTQNLSIDGSYLECNYRPKAGLPQVTDRIREAAIRDVLELALLSEAHPRS
KMSVQIQELEDRGSIDACAVNCACLAMLIGGLPLKYSFAAVHAIINEQGE
YVLDPDQSETLHQRASFTFAFDSVEGNLLLIQTKGSFKIAQFNDIECLCL
AASAEIFQFYRNQVAKYHGRSEATAKKEDVNETASFLDH
BO23918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp46-PA | 233 | CG4043-PA | 1..233 | 1..233 | 1197 | 100 | Plus |
| Ski6-PB | 246 | CG15481-PB | 22..221 | 13..206 | 150 | 23.8 | Plus |
| Ski6-PA | 246 | CG15481-PA | 22..221 | 13..206 | 150 | 23.8 | Plus |
