BO23920.complete Sequence
997 bp assembled on 2010-04-15
GenBank Submission: KX794951
> BO23920.complete
GAAGTTATCAGTCGACATGTTGACCGAATTCGCTGGCAATCTATCGCATC
CGCTGGAGTTTGGTCATGTTCTGGAGGTCGTGGCCAAGACCATCGATGGA
GCAGCCAGGTTCCACATTAACCTCTGCACGGCCAAGAGCACGGTCGATCC
GAACGCAGATATTGGGCTACGCTTCTCATGCTATTTTCGGAACGATGTGA
TCGTTCGAAATTCCCGGATAAACGGCGCCTGGGGCGAGGAGGAGTCCCAT
GTCATGGACCCCAACACCCTGCCCAATCCCATCGTCAGTGGCGAGTTCTT
TTTGGTCTACATTCTTTGTTGCGAGGACAGCTTTGCCATCTCGATAAATA
GCCGAGAGTTCTGCAGATTCCGCTACCGCATGCCGTTGGGAACGATTCGT
GCTCTGGAGATCCGTGATCAGATCCAAGTCATTAAACAGGTGGATCATCG
TACTGTGTTTCCAAATCCGTGGCCAGCCGTTCACGCCTCGGACTACTTTA
AGGCGTTCAGTAACGATCAGCCAATTTTGTTTAGTCCGGGCCATGTGATT
GTCCTTACAGCTCGGTGTTTCGAGAATAAAAAGGGACAGTTCATAATCAA
GTTCATGGACTCGGATACCAAGCGCGAGGAGCTACACTTCAGTGTGCGTT
TCGATGAGAAGGCAGTAGTGCGCAATTCCATGAACAAAAATTTTGAATTC
GGAAGCGAGGAGCGCCATGGAGGTTTCCCCTTCGTCTTTAACCAGCAATT
CAAGCTGGCGCTTGCGTTTACGGAACGCGAGGTTTTGACTGCCGTGGACG
GTTATAACTTCTTTAGCTACACCTGGCGCACACCCAATGCCATGATGAAT
CTAGTGGGTTTCAAGGTGACAAGCATAAATGGCCTGGTAGTGCAGATAAC
TGGTGTGGATCACCTGCAGACGGGGGATCCTACGTGCGCTGGCTTCGAAA
AATATTCCCGCCATGATTACGAATGTGTTGCAAGCTTTCTAGACCAT
BO23920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5335-RA | 966 | CG5335-PA | 1..963 | 17..979 | 4710 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5335-RA | 1273 | CG5335-RA | 251..1214 | 16..979 | 4715 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18621999..18622588 | 107..696 | 2935 | 99.8 | Plus |
| 2R | 25286936 | 2R | 18622645..18622927 | 697..979 | 1325 | 97.9 | Plus |
| 2R | 25286936 | 2R | 18621791..18621885 | 16..110 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:59:35 has no hits.
BO23920.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:03 Download gff for
BO23920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5335-RA | 253..1210 | 22..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:37 Download gff for
BO23920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5335-RA | 257..1214 | 22..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:30 Download gff for
BO23920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5335-RA | 257..1214 | 22..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:30 Download gff for
BO23920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18621797..18621883 | 22..108 | 100 | -> | Plus |
| 2R | 18622001..18622588 | 109..696 | 99 | -> | Plus |
| 2R | 18622645..18622927 | 697..981 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:37 Download gff for
BO23920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14509302..14509388 | 22..108 | 100 | -> | Plus |
| arm_2R | 14509506..14510093 | 109..696 | 99 | -> | Plus |
| arm_2R | 14510150..14510432 | 697..981 | 97 | | Plus |
BO23920.pep Sequence
Translation from 16 to 997
> BO23920.pep
MLTEFAGNLSHPLEFGHVLEVVAKTIDGAARFHINLCTAKSTVDPNADIG
LRFSCYFRNDVIVRNSRINGAWGEEESHVMDPNTLPNPIVSGEFFLVYIL
CCEDSFAISINSREFCRFRYRMPLGTIRALEIRDQIQVIKQVDHRTVFPN
PWPAVHASDYFKAFSNDQPILFSPGHVIVLTARCFENKKGQFIIKFMDSD
TKREELHFSVRFDEKAVVRNSMNKNFEFGSEERHGGFPFVFNQQFKLALA
FTEREVLTAVDGYNFFSYTWRTPNAMMNLVGFKVTSINGLVVQITGVDHL
QTGDPTCAGFEKYSRHDYECVASFLDH
BO23920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5335-PA | 321 | CG5335-PA | 1..321 | 1..321 | 1714 | 100 | Plus |
| CG13950-PA | 316 | CG13950-PA | 14..273 | 15..270 | 221 | 26.9 | Plus |
