BO23925.complete Sequence
3115 bp assembled on 2010-08-11
GenBank Submission: KX799799
> BO23925.complete
GAAGTTATCAGTCGACATGGATACCTTCAATGTACCTATGCTGGCGGAGA
GCAGCAACACCAACTATGCAACAGAAGCTACCAGCAATCATCACCACCTG
CAACATCAGCATCAGCAGCAACATTCACATCAGCAGCAGCAGCAGCAGCA
ACTCCTAATGCCCCATCATCACAAGGATCAAATGCTGGCGGCGGGCAGTT
CGCCCATGCTGCCATTCTATTCACACTTGCAGTTGCAACAGAAGGATGCA
ACTGCAACAATAGGACCTGCAGCAGCAGCAGCAGCAGTTGAGGCGGCAAC
AACATCGGCAAATGCCGATAACTTCAGTTCATTGCAAACGATCGATGCCA
GTCAACTGGATGGAGGCATCTCCTTGAGCGGCTTGTGCGATCGTTTCTTT
GTGGCCAGTCCAAATCCCCACAGCAATAGCAACATGACACTAATGGGCAC
TGCCACAGCTGCAACAACTACCACTACCAACAACAACAATAATAACAACA
CTAACAATAACAATAACAACAACGTGGAGGCTAAGACAGTGAGGCCATCG
AACGGCAATTCGGTGATCATCGAATCTGTGACGATGCCATCGTTTGCCAA
TATTCTATTTCCCACCCATCGCAGCGCCAACGAGTGCATTGATCCCGCCC
TGTTGCAAAAGAATCCCCAAAATCCAAATGGCAACAACAGTAGCATAATT
GTGCCGCCCGTCGAATATCATCAATTGAAACCACTTGAAGTCAATTCGTC
GACTTCCGTTTCCACCAGCAACTTCCTGTCCTCCACAACGGCCCAATTGT
TGGACTTTGAGGTGCAGGTGGGCAAGGATGATGGCCACATTAGCACCACT
ACGACCACAGGGCCGGGCTCTGGATCGGCATCGGGTTCAGGATCGGGATC
GGGATCGGGATCAGGATCGATTGCACGCACAATAGGCACTGCAACGCCCA
CAACGACAACATCCATGAGCAACACTGCCAATCCGACGAGGAGCTCATTG
CACAGTATTGAGGAGCTGGCCGCCAGTTCCTGTGCCCCGAGAGCAGCGTC
TCCCAACAGCAACCACACTAGCAGTGCCAGCACCACTCCGCAGCAGCAGC
AGCAGCAGCAGCATCACATGCAAAGCGGCAACCACAGTGGCTCCAATCTC
AGCAGCGACGATGAGTCCATGTCCGAGGATGAGTTCGGTCTGGAAATCGA
CGATAACGGAGGCTACCAGGACACCACCTCCTCACACTCGCAACAGAGCG
GAGGAGGCGGTGGCGGCGGCGGTGGCAACCTGCTAAACGGCAGCTCCGGC
GGCAGCTCCGCCGGCGGTGGCTACATGCTGCTCCCCCAGGCGGCCAGCTC
CAGTGGCAATAATGGCAATCCGAATGCCGGCCACATGTCCTCCGGTTCCG
TGGGCAATGGCAGCGGAGGCGCTGGCAATGGCGGAGCGGGCGGCAACTCC
GGTCCCGGCAATCCCATGGGCGGTACGAGCGCCACGCCGGGACACGGCGG
CGAGGTGATCGACTTCAAGCACCTGTTCGAGGAGCTTTGCCCCGTGTGTG
GCGACAAGGTGAGCGGCTACCACTACGGCCTGCTCACCTGCGAGTCCTGC
AAGGGATTCTTCAAGCGCACCGTGCAGAACAAGAAGGTCTACACCTGCGT
GGCGGAGCGGTCGTGCCACATCGACAAGACGCAGCGCAAGCGGTGTCCCT
ACTGCCGATTCCAGAAGTGCCTCGAGGTGGGCATGAAGCTAGAGGCTGTT
CGAGCGGATAGAATGCGTGGTGGACGCAACAAATTCGGACCCATGTACAA
ACGGGATCGCGCGCGGAAGTTGCAAGTGATGCGGCAGCGGCAGTTGGCGC
TGCAAGCGCTGCGCAACTCGATGGGTCCGGACATCAAGCCAACGCCGATC
TCGCCGGGCTACCAGCAAGCATATCCAAATATGAACATTAAGCAGGAAAT
TCAAATACCTCAGGTATCCTCACTCACCCAATCTCCGGACTCGTCGCCCA
GCCCCATAGCAATTGCGTTGGGACAGGTGAACGCGAGCACGGGCGGTGTT
ATAGCCACGCCCATGAACGCCGGCACTGGCGGCAGTGGGGGCGGTGGTCT
GAACGGACCAAGTTCCGTGGGCAACGGCAATAGCAGCAACGGCAGCAGCA
ACGGCAACAACAACAGCAGCACGGGCAACGGAACGTCCGGAGGAGGAGGT
GGCAATAATGCGGGCGGCGGAGGAGGAGGAACCAATTCCAACGATGGCCT
GCATCGCAACGGCGGCAATGGCAACAGCAGTTGCCACGAGGCTGGAATAG
GATCTCTGCAGAACACGGCCGACTCGAAATTGTGCTTCGATTCTGGCACA
CATCCATCGAGCACAGCCGACGCGCTAATCGAGCCATTAAGAGTCTCACC
GATGATTCGTGAATTTGTGCAATCTATTGACGATCGGGAATGGCAGACGC
AACTGTTTGCCCTGCTGCAGAAGCAAACCTACAACCAGGTGGAAGTGGAT
CTCTTCGAGCTGATGTGCAAAGTGCTCGACCAGAATTTGTTCTCGCAAGT
AGACTGGGCACGGAACACCGTCTTCTTCAAGGATCTGAAGGTCGACGACC
AAATGAAGCTGCTGCAGCATTCCTGGTCGGACATGCTTGTTCTGGATCAC
CTGCATCATCGAATCCATAACGGCCTGCCCGACGAGACGCAACTGAACAA
TGGTCAGGTGTTCAATCTGATGAGTCTGGGTTTGTTGGGAGTGCCACAGC
TGGGCGATTACTTCAACGAGCTGCAGAACAAGCTGCAGGACCTGAAATTC
GATATGGGCGACTATGTCTGCATGAAATTCCTAATCCTGTTGAATCCAAG
TGTACGGGGTATTGTCAACCGGAAGACCGTCTCCGAGGGACATGATAATG
TGCAAGCCGCTTTGCTGGACTACACCCTCACCTGCTATCCGTCAGTGAAT
GACAAATTCAGAGGGCTAGTTAACATCTTACCGGAAATCCATGCCATGGC
CGTTCGCGGCGAGGATCACCTGTACACCAAGCACTGTGCCGGCAGTGCGC
CCACCCAAACGCTGCTCATGGAGATGCTGCACGCCAAGCGCAAGGGAGCA
AGCTTTCTAGACCAT
BO23925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ftz-f1-RB | 3084 | CG4059-PB | 1..3081 | 17..3097 | 15405 | 100 | Plus |
| ftz-f1-RC | 2412 | CG4059-PC | 522..2409 | 1210..3097 | 9440 | 100 | Plus |
| ftz-f1-RA | 2412 | CG4059-PA | 522..2409 | 1210..3097 | 9440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ftz-f1-RB | 5407 | CG4059-RB | 1327..4407 | 17..3097 | 15405 | 100 | Plus |
| ftz-f1-RC | 5910 | CG4059-RC | 1881..3768 | 1210..3097 | 9440 | 100 | Plus |
| ftz-f1-RA | 3980 | CG4059-RA | 1093..2980 | 1210..3097 | 9440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18797536..18798731 | 1212..17 | 5980 | 100 | Minus |
| 3L | 28110227 | 3L | 18763329..18763864 | 1745..1210 | 2680 | 100 | Minus |
| 3L | 28110227 | 3L | 18755134..18755508 | 2334..1960 | 1875 | 100 | Minus |
| 3L | 28110227 | 3L | 18753183..18753445 | 2851..2589 | 1315 | 100 | Minus |
| 3L | 28110227 | 3L | 18755654..18755874 | 1965..1745 | 1105 | 100 | Minus |
| 3L | 28110227 | 3L | 18754312..18754514 | 2592..2390 | 1015 | 100 | Minus |
| 3L | 28110227 | 3L | 18752749..18752895 | 3097..2951 | 735 | 100 | Minus |
| 3L | 28110227 | 3L | 18753017..18753118 | 2951..2850 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 18754577..18754634 | 2391..2334 | 290 | 100 | Minus |
| X | 23542271 | X | 2000555..2000692 | 1598..1735 | 195 | 76.1 | Plus |
| 2L | 23513712 | 2L | 21254795..21254883 | 1538..1626 | 190 | 80.9 | Plus |
Blast to na_te.dros performed 2014-11-28 02:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2684 | 131..507 | 205 | 56.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3283..3354 | 247..318 | 135 | 65.3 | Plus |
BO23925.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 10:36:07 Download gff for
BO23925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-f1-RB | 1..3081 | 17..3099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:34 Download gff for
BO23925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-f1-RB | 1327..4407 | 17..3099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:54 Download gff for
BO23925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-f1-RB | 1327..4407 | 17..3099 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:54 Download gff for
BO23925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18752747..18752895 | 2951..3099 | 98 | <- | Minus |
| 3L | 18753018..18753118 | 2850..2950 | 100 | <- | Minus |
| 3L | 18753185..18753443 | 2591..2849 | 100 | <- | Minus |
| 3L | 18754314..18754512 | 2392..2590 | 100 | <- | Minus |
| 3L | 18754577..18754633 | 2335..2391 | 100 | <- | Minus |
| 3L | 18755134..18755504 | 1964..2334 | 100 | <- | Minus |
| 3L | 18755656..18755873 | 1746..1963 | 100 | <- | Minus |
| 3L | 18763329..18763862 | 1212..1745 | 100 | <- | Minus |
| 3L | 18797537..18798731 | 17..1211 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:34 Download gff for
BO23925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18745847..18745995 | 2951..3099 | 98 | <- | Minus |
| arm_3L | 18746118..18746218 | 2850..2950 | 100 | <- | Minus |
| arm_3L | 18746285..18746543 | 2591..2849 | 100 | <- | Minus |
| arm_3L | 18747414..18747612 | 2392..2590 | 100 | <- | Minus |
| arm_3L | 18747677..18747733 | 2335..2391 | 100 | <- | Minus |
| arm_3L | 18748234..18748604 | 1964..2334 | 100 | <- | Minus |
| arm_3L | 18748756..18748973 | 1746..1963 | 100 | <- | Minus |
| arm_3L | 18756429..18756962 | 1212..1745 | 100 | <- | Minus |
| arm_3L | 18790637..18791831 | 17..1211 | 100 | | Minus |
BO23925.pep Sequence
Translation from 16 to 3115
> BO23925.pep
MDTFNVPMLAESSNTNYATEATSNHHHLQHQHQQQHSHQQQQQQQLLMPH
HHKDQMLAAGSSPMLPFYSHLQLQQKDATATIGPAAAAAAVEAATTSANA
DNFSSLQTIDASQLDGGISLSGLCDRFFVASPNPHSNSNMTLMGTATAAT
TTTTNNNNNNNTNNNNNNNVEAKTVRPSNGNSVIIESVTMPSFANILFPT
HRSANECIDPALLQKNPQNPNGNNSSIIVPPVEYHQLKPLEVNSSTSVST
SNFLSSTTAQLLDFEVQVGKDDGHISTTTTTGPGSGSASGSGSGSGSGSG
SIARTIGTATPTTTTSMSNTANPTRSSLHSIEELAASSCAPRAASPNSNH
TSSASTTPQQQQQQQHHMQSGNHSGSNLSSDDESMSEDEFGLEIDDNGGY
QDTTSSHSQQSGGGGGGGGGNLLNGSSGGSSAGGGYMLLPQAASSSGNNG
NPNAGHMSSGSVGNGSGGAGNGGAGGNSGPGNPMGGTSATPGHGGEVIDF
KHLFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSC
HIDKTQRKRCPYCRFQKCLEVGMKLEAVRADRMRGGRNKFGPMYKRDRAR
KLQVMRQRQLALQALRNSMGPDIKPTPISPGYQQAYPNMNIKQEIQIPQV
SSLTQSPDSSPSPIAIALGQVNASTGGVIATPMNAGTGGSGGGGLNGPSS
VGNGNSSNGSSNGNNNSSTGNGTSGGGGGNNAGGGGGGTNSNDGLHRNGG
NGNSSCHEAGIGSLQNTADSKLCFDSGTHPSSTADALIEPLRVSPMIREF
VQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARN
TVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFN
LMSLGLLGVPQLGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIV
NRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAMAVRGED
HLYTKHCAGSAPTQTLLMEMLHAKRKGASFLDH
BO23925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ftz-f1-PB | 1027 | CG4059-PB | 1..1027 | 1..1027 | 5412 | 100 | Plus |
| ftz-f1-PC | 803 | CG4059-PC | 10..803 | 249..1027 | 3413 | 82.5 | Plus |
| ftz-f1-PA | 803 | CG4059-PA | 10..803 | 249..1027 | 3413 | 82.5 | Plus |
| ftz-f1-PD | 853 | CG4059-PD | 10..853 | 249..1027 | 3342 | 77.5 | Plus |
| Hr4-PC | 1518 | CG43934-PC | 667..1030 | 286..613 | 407 | 32.2 | Plus |
