BO23929.complete Sequence
1540 bp assembled on 2010-05-12
GenBank Submission: KX799284
> BO23929.complete
GAAGTTATCAGTCGACATGAGTTTCCATAAGAGCGACTCGCGGACGCCGC
TGGCGCCCACCGAGTACACTAAAATCCCGACGGTCACTGCGGGCTACGGA
GAAAACGAGAAGCCCAAAGGCGGCAAAGGCGGGCAATCCAAGTTCATACG
TTCGGACATGGCCGACGTCCCCGTGCAGCAGGCGGCAGGATCGACGCTTC
CGTTGGTAATCTCTCGGAAAAAAGGTGACGACTCCGAGGATGGCAACTAC
AATCCGTTCGAGCACCGCAAGGTGGAGCATCCGACATCGGATCTCGAGAC
ATTTGTACACTTGCTAAAGGGATCGCTTGGCTCCGGAATATTGGCCATGC
CAATGGCCTTCTCCCACGCTGGATTGTGGTTCGGTTTGGTGGCCACCTTC
GCGGTGGGCACCTTGTGCACCTACTGCGTTCACATCCTGGTCAAATGCGC
CCACATCCTATGCCGACGTCGCAAAATCCCGATGATGGGATTCGCCGATG
TGGCGGAACAGGCTTTCCTCGACGGACCACCTGCCCTGAATCGCTGGTCA
CGCTTCATCCGGTTCATGGTCAATACGTTTCTGGTTATCGATTTGCTGGG
CTGCTGCTGCATCTATCTGGTTTTCGTGGCCACCAATGTGGAGCAGGTCG
TGCGGGTGTATATGGAAACGGAGCTGAGCATTAGAGTTTGGATCATGATC
GTGACGGCACCGCTGATCTTTATGTGCCTGGTACGCAACCTGAAGTTCCT
CACGCCCTTCTCGATGATAGCCAACATCCTGATGTTCGTGGGCATCGTGA
TCACCTTCATCTATATGTTCTCCGATATTCCTGCACCCGTGGAACGTCCT
GGAATTGTGAGTGTAACCGAATGGCCATTGTTCTTCGGCACCGTGATCTT
TGCTCTGGAGGGCATCGGTGTAGTTATGTCCCTGGAGAACGACATGAAGA
ACCCCAGCCACTTCATCGGTTGCCCATCTGTCCTGAACTTCGGCATGGGT
CTGGTGATTGCCCTCTACACCCTGGTTGGATTCTTTGGCTTCCTGAAGTA
CGGCCCGGAAACCCAGGCCAGCATTACGCTGAATCTGCCCCTGGAGGATA
AATTGGCCCAATCCGTCAAGTTGATGATTGCCATCGCCATCTTCTTCACC
TTCACCCTGCAGTTCTACGTGCCCGTCACGATTTTGTGGAAGGGTCTGGA
GCACAAGATCCGGCCGGAGAAGCAGAACATCAGTGAATACGGACTTCGTG
TCTTTCTGGTGCTTCTGTGCGGCGGAATCGCAGTGGCTCTGCCCAACTTG
GGACCTTTCATCTCGCTAATTGGAGCGGTGTGCCTGAGTACGCTGGGCAT
GATCGTTCCGGCGACCATTGAGCTGGCCGTGTATCATGAGGATCCCGGAT
ACGGGCGCTTCAATTGGCGGCTGTGGAAGAACTCCGGACTGATACTGTTC
GGCGTGGTGGGTTTCGTGGCCGGAACCTATGTCAGCATCATCGAATTCCA
CGCCGAATTCAGCAGCGGTCACGCAAGCTTTCTAGACCAT
BO23929.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-RB | 1509 | CG43693-PB | 1..1506 | 17..1522 | 7380 | 99.3 | Plus |
| CG43693-RA | 1509 | CG43693-PA | 1..1506 | 17..1522 | 7380 | 99.3 | Plus |
| CG43693-RE | 1500 | CG43693-PE | 43..1497 | 68..1522 | 7125 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-RB | 2399 | CG43693-RB | 268..1773 | 17..1522 | 7380 | 99.3 | Plus |
| CG43693-RA | 2541 | CG43693-RA | 410..1915 | 17..1522 | 7380 | 99.3 | Plus |
| CG43693-RE | 2227 | CG43693-RE | 147..1601 | 68..1522 | 7125 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11037622..11038434 | 1101..289 | 3960 | 99.1 | Minus |
| 3L | 28110227 | 3L | 11036984..11037245 | 1522..1261 | 1310 | 100 | Minus |
| 3L | 28110227 | 3L | 11037396..11037554 | 1261..1103 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 11039617..11039764 | 289..142 | 710 | 98.6 | Minus |
| 3L | 28110227 | 3L | 11039996..11040068 | 143..71 | 365 | 100 | Minus |
| 3L | 28110227 | 3L | 11046178..11046231 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:03:55 has no hits.
BO23929.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:45 Download gff for
BO23929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6327-RB | 266..1771 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:47 Download gff for
BO23929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RA | 410..1915 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:56 Download gff for
BO23929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RA | 410..1915 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:56 Download gff for
BO23929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11036981..11037244 | 1262..1524 | 99 | <- | Minus |
| 3L | 11037396..11037555 | 1102..1261 | 99 | <- | Minus |
| 3L | 11037622..11038434 | 289..1101 | 99 | <- | Minus |
| 3L | 11039618..11039764 | 142..288 | 98 | <- | Minus |
| 3L | 11039998..11040068 | 71..141 | 100 | <- | Minus |
| 3L | 11046178..11046231 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:47 Download gff for
BO23929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11030081..11030344 | 1262..1524 | 99 | <- | Minus |
| arm_3L | 11030496..11030655 | 1102..1261 | 99 | <- | Minus |
| arm_3L | 11030722..11031534 | 289..1101 | 99 | <- | Minus |
| arm_3L | 11032718..11032864 | 142..288 | 98 | <- | Minus |
| arm_3L | 11033098..11033168 | 71..141 | 100 | <- | Minus |
| arm_3L | 11039278..11039331 | 17..70 | 100 | | Minus |
BO23929.pep Sequence
Translation from 16 to 1540
> BO23929.pep
MSFHKSDSRTPLAPTEYTKIPTVTAGYGENEKPKGGKGGQSKFIRSDMAD
VPVQQAAGSTLPLVISRKKGDDSEDGNYNPFEHRKVEHPTSDLETFVHLL
KGSLGSGILAMPMAFSHAGLWFGLVATFAVGTLCTYCVHILVKCAHILCR
RRKIPMMGFADVAEQAFLDGPPALNRWSRFIRFMVNTFLVIDLLGCCCIY
LVFVATNVEQVVRVYMETELSIRVWIMIVTAPLIFMCLVRNLKFLTPFSM
IANILMFVGIVITFIYMFSDIPAPVERPGIVSVTEWPLFFGTVIFALEGI
GVVMSLENDMKNPSHFIGCPSVLNFGMGLVIALYTLVGFFGFLKYGPETQ
ASITLNLPLEDKLAQSVKLMIAIAIFFTFTLQFYVPVTILWKGLEHKIRP
EKQNISEYGLRVFLVLLCGGIAVALPNLGPFISLIGAVCLSTLGMIVPAT
IELAVYHEDPGYGRFNWRLWKNSGLILFGVVGFVAGTYVSIIEFHAEFSS
GHASFLDH
BO23929.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-PB | 502 | CG43693-PB | 1..502 | 1..502 | 2626 | 100 | Plus |
| CG43693-PA | 502 | CG43693-PA | 1..502 | 1..502 | 2626 | 100 | Plus |
| CG43693-PE | 499 | CG43693-PE | 15..499 | 18..502 | 2535 | 100 | Plus |
| CG43693-PD | 490 | CG43693-PD | 3..490 | 15..502 | 2532 | 99.4 | Plus |
| CG43693-PG | 572 | CG43693-PG | 89..572 | 19..502 | 2530 | 100 | Plus |
