BO23939.complete Sequence
547 bp assembled on 2010-04-15
GenBank Submission: KX800018
> BO23939.complete
GAAGTTATCAGTCGACATGAACACGTTAAAATACATTGATAATAAAGAAA
TAATAATTGAGATTCTTCATTTGGCTATAGATTACCTGATTGGAAATTTT
ACTGACGAACAAACTCTTCGTTCGTCACACAAGTATGGATTTCAAAATTC
AGACGACTTTCTGTTGGTCATACGAATCGTGTCAAAGTTTTACAAGGATA
TTTTAGTAAAATGCGAAAAACTAACTCAATTTTCGTGTATTAACCCTGAA
ATGAGCCGGCATGCACATCTTGTGCTATCAGCACGCTATTCTGAGTTAAG
AAGCCATCTCGAGCATTGGGAGTTCTTGGAAAAAAAGAATGTCATAGAAT
CTTTTGGATGGGACACACGGCTAATATTAGGAGATAGCAGCTTTGGAAGG
CATATACATCAACTAACAACTTTGGTTTTCCAATACCGTCACATGCATAT
TCAAAAAGACTTGCATTTTGAAATGAATAACGTAATGTTAAGCGACTTCA
TTTATTTATTAGAAAATTTATTAGCCAGGGCAAGCTTTCTAGACCAT
BO23939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40439-RA | 516 | CG40439-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
| CG40439-RB | 282 | CG40439-PB | 1..279 | 251..529 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40439-RA | 707 | CG40439-RA | 59..571 | 17..529 | 2565 | 100 | Plus |
| CG40439-RB | 688 | CG40439-RB | 102..552 | 79..529 | 2255 | 100 | Plus |
| CG40439-RB | 688 | CG40439-RB | 59..106 | 17..64 | 240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 854966..855435 | 60..529 | 2350 | 100 | Plus |
| 2L | 23513712 | 2L | 22797655..22798124 | 529..60 | 2350 | 100 | Minus |
| 2R | 25286936 | 2R | 854872..854916 | 17..61 | 225 | 100 | Plus |
| 2L | 23513712 | 2L | 22798174..22798218 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:16:33 has no hits.
BO23939.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:36 Download gff for
BO23939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40439-RA | 18..530 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:41 Download gff for
BO23939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40439-RA | 59..571 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:05 Download gff for
BO23939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40439-RA | 59..571 | 17..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:05 Download gff for
BO23939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22797653..22798122 | 62..531 | 99 | <- | Minus |
| 2L | 22798174..22798218 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:41 Download gff for
BO23939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22690385..22690854 | 62..531 | 99 | <- | Minus |
| arm_2L | 22690906..22690950 | 17..61 | 100 | | Minus |
BO23939.pep Sequence
Translation from 16 to 547
> BO23939.pep
MNTLKYIDNKEIIIEILHLAIDYLIGNFTDEQTLRSSHKYGFQNSDDFLL
VIRIVSKFYKDILVKCEKLTQFSCINPEMSRHAHLVLSARYSELRSHLEH
WEFLEKKNVIESFGWDTRLILGDSSFGRHIHQLTTLVFQYRHMHIQKDLH
FEMNNVMLSDFIYLLENLLARASFLDH
BO23939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40439-PA | 171 | CG40439-PA | 1..171 | 1..171 | 895 | 100 | Plus |
| CG40439-PB | 93 | CG40439-PB | 1..93 | 79..171 | 492 | 100 | Plus |
