BO23940.complete Sequence
1048 bp assembled on 2010-04-15
GenBank Submission: KX798136
> BO23940.complete
GAAGTTATCAGTCGACATGGCAAATCGCGCAAATCGTCATGCTGCTCGCA
CCGAGGATTCGGATAATACCATTAACTACGTCCAATGCGACGGACTGGCC
GTCATGAAGATGGTGAAGCACTGCCATGAGGAGTCGAGCAACATGGACCT
CGCCCAGGGCGCCCTGCTCGGTCTGGTGGTAGACAAGTGCCTGGAGATCA
CCAACTGCTTCCCGTTTCCCAAGAGCGGCGATGAGACCATGGACGAGGAG
ATGTACCAGCTGACCGTGATGCGTCGCCTGCGTCGCGTCAACGTAGATCA
TCTCCATGTGGGCTGGTACCAGAGCTCCGACGTGGGCAACAGCCTGTCAA
TGGCTCTGTTGGAATCGCAGTACCACTACCAGACCAGCATTGAAGAGTCC
GTCGTTGTCGTCTACGATACGCAGAAGTCATCCCGCGGATTCCTGTGCTT
GAAGGCCTACCGCCTTACTCCGCAGGCCATTCAGATGTACAAGGATGGCG
ACTTCACTCCAGAGGCATTCCGCACCCTGAAGGTCGGCTACGAGAACCTC
TTCGCCGAGATTCCCATTGTGATCAAGAACTCGCCGCTGACCAACATTAT
GATGAGCGAGCTGAACGAGCTGCTGCCCGAGGACAAGGGGCACAACTTCC
TGGACCTGGGCACCGCCACCGTATTGGAGAACCAAATGCGTAGCCTGATC
GAGCGCGTCGACGAGTTGTACCAGGAGGCAGTGCGCTATAACAAGTACCA
GCAGGTGGTCTTCAAGCAGGATACGGAGAAGCACCGTGCTCTGGCTAAGC
TGGCCGCCGAGAACGCCGTTCGCACATCGAAGGGAGAGCCCACGGTGCCA
GAGGAGGAAGTGATCAAACAGTTCCGCCCCATGACTGCGCCCAACCGCCT
GACGGCCACCATAACCTCTGGCCAGATCAATACCCACGCCCAGCATATCG
CACAATTCTGTTCGCAATCGCTGGCCAAACTCTTCATCACGGAATCGCTG
CAAATTGCCAAGGAAGCAAAGGAAACCAAAGCAAGCTTTCTAGACCAT
BO23940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p40-RB | 1017 | CG9124-PB | 1..1014 | 17..1030 | 5070 | 100 | Plus |
| eIF-3p40-RA | 1017 | CG9124-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p40-RB | 1182 | CG9124-RB | 40..1059 | 11..1030 | 5085 | 99.9 | Plus |
| eIF-3p40-RA | 1496 | CG9124-RA | 354..1373 | 11..1030 | 5085 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5051636..5052315 | 776..97 | 3400 | 100 | Minus |
| 2L | 23513712 | 2L | 5051316..5051571 | 1030..775 | 1280 | 100 | Minus |
| 2L | 23513712 | 2L | 5052654..5052741 | 98..11 | 425 | 98.9 | Minus |
Blast to na_te.dros performed 2014-11-26 15:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 8315..8386 | 648..717 | 121 | 67.1 | Plus |
BO23940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:37 Download gff for
BO23940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RB | 475..1488 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:45 Download gff for
BO23940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RA | 360..1373 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:08 Download gff for
BO23940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RA | 360..1373 | 17..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:08 Download gff for
BO23940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5051314..5051570 | 776..1032 | 99 | <- | Minus |
| 2L | 5051637..5052314 | 98..775 | 100 | <- | Minus |
| 2L | 5052655..5052735 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:45 Download gff for
BO23940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5051314..5051570 | 776..1032 | 99 | <- | Minus |
| arm_2L | 5051637..5052314 | 98..775 | 100 | <- | Minus |
| arm_2L | 5052655..5052735 | 17..97 | 100 | | Minus |
BO23940.pep Sequence
Translation from 16 to 1048
> BO23940.pep
MANRANRHAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGAL
LGLVVDKCLEITNCFPFPKSGDETMDEEMYQLTVMRRLRRVNVDHLHVGW
YQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRL
TPQAIQMYKDGDFTPEAFRTLKVGYENLFAEIPIVIKNSPLTNIMMSELN
ELLPEDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFK
QDTEKHRALAKLAAENAVRTSKGEPTVPEEEVIKQFRPMTAPNRLTATIT
SGQINTHAQHIAQFCSQSLAKLFITESLQIAKEAKETKASFLDH
BO23940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p40-PB | 338 | CG9124-PB | 1..338 | 1..338 | 1736 | 100 | Plus |
| eIF-3p40-PA | 338 | CG9124-PA | 1..338 | 1..338 | 1736 | 100 | Plus |
