Clone BO23945 Report

Search the DGRC for BO23945

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:239
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptHP1b-RA
Protein status:BO23945.pep: Imported from assembly
Sequenced Size:754

Clone Sequence Records

BO23945.complete Sequence

754 bp assembled on 2010-04-15

GenBank Submission: KX796017

> BO23945.complete
GAAGTTATCAGTCGACATGGCCGAATTCTCAGTGGAACGCGTCGAGGACA
AGCGAACGGTGAACGGACGAACGGAATACTATCTAAAGTGGAAGGGCTAT
CCGCGCAGCGAAAACACCTGGGAGCCGGTGGAGAATCTCGACTGTCCAGA
CCTGATAGCCAACTTCGAGGAGTCGCTGAAGAACAACAAGAAGGAGACAA
AGAAACGCCTGTCCACCTCCTCCACACCCGAATCCATACGCAGCAAACGC
AAGAGCTTCCTGGAGGACGATACCGAGGAGCAGAAGAAGCTGATCGGCTT
CGAGCGCGGTCTGGAGGCATCAAAAATACTGGGCGCCACCGACTCATCCG
GGCACCTAATGTTCCTCATGAAGTGGAAGGGCAGCGATCACGCCGACCTT
GTGCCCGCCAAGCTGGCCAACACTCGATGCCCCCAGGTGGTCATACAGTT
CTATGAGGAGCGCCTCACCTGGCACACGGGCAGCGGCAATGGTAATGGGA
ATACGAATTCCGTCAATTTGGGATCATCCGGTGGCCTGGGCTCCGTCGGC
GGCAGTGGGGCTGGCGATGATACTGCTCCCGGCAGCGTTGGCACCACCGG
TGGCGGCAGCAATATAGATGGCGGTGACGAGGAGGATCCCGAACCGGCTA
GCCCCATTGGCAGCATCAATCAAGACGAGAATATCAAGCCGGACGAGAGT
AGTGAGCTGGACAACGGACAGCCGGATGCGGATGACGCAAGCTTTCTAGA
CCAT

BO23945.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
HP1b-RB 723 CG7041-PB 1..720 17..736 3540 99.4 Plus
HP1b-RC 723 CG7041-PC 1..720 17..736 3540 99.4 Plus
HP1b-RA 723 CG7041-PA 1..720 17..736 3540 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
HP1b-RB 1105 CG7041-RB 106..825 17..736 3540 99.4 Plus
HP1b-RC 1493 CG7041-RC 106..825 17..736 3540 99.4 Plus
HP1b-RA 1210 CG7041-RA 211..930 17..736 3540 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9081359..9082078 17..736 3540 99.4 Plus
Blast to na_te.dros performed on 2014-11-27 13:52:17 has no hits.

BO23945.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:39 Download gff for BO23945.complete
Subject Subject Range Query Range Percent Splice Strand
HP1b-RA 211..930 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:22 Download gff for BO23945.complete
Subject Subject Range Query Range Percent Splice Strand
HP1b-RA 211..930 17..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:24 Download gff for BO23945.complete
Subject Subject Range Query Range Percent Splice Strand
HP1b-RA 211..930 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:24 Download gff for BO23945.complete
Subject Subject Range Query Range Percent Splice Strand
X 9081359..9082078 17..738 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:22 Download gff for BO23945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8975392..8976111 17..738 99   Plus

BO23945.pep Sequence

Translation from 16 to 754

> BO23945.pep
MAEFSVERVEDKRTVNGRTEYYLKWKGYPRSENTWEPVENLDCPDLIANF
EESLKNNKKETKKRLSTSSTPESIRSKRKSFLEDDTEEQKKLIGFERGLE
ASKILGATDSSGHLMFLMKWKGSDHADLVPAKLANTRCPQVVIQFYEERL
TWHTGSGNGNGNTNSVNLGSSGGLGSVGGSGAGDDTAPGSVGTTGGGSNI
DGGDEEDPEPASPIGSINQDENIKPDESSELDNGQPDADDASFLDH

BO23945.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
HP1b-PB 240 CG7041-PB 1..240 1..240 1270 100 Plus
HP1b-PC 240 CG7041-PC 1..240 1..240 1270 100 Plus
HP1b-PA 240 CG7041-PA 1..240 1..240 1270 100 Plus
Su(var)205-PB 206 CG8409-PB 23..202 3..154 395 44.4 Plus
Su(var)205-PA 206 CG8409-PA 23..202 3..154 395 44.4 Plus