Clone BO23946 Report

Search the DGRC for BO23946

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:239
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG5515-RA
Protein status:BO23946.pep: Imported from assembly
Sequenced Size:766

Clone Sequence Records

BO23946.complete Sequence

766 bp assembled on 2010-04-15

GenBank Submission: KX799124

> BO23946.complete
GAAGTTATCAGTCGACATGAGCCGCAACTACAAGGAAGATCAGACCAACG
AGGTCGAGGCGTTGGACTCCATATACTGTGGCGATATGGAGATTCTCGCC
ACGGAGCCGCACCACAAATTCCAGATTCCAATTGCCACGGAGGAGTACAG
TTCGGAGGAGCCCGAGAAAGGTCTTGCCTGCAAACTGGTCTTCACATTCA
CAGCTACCTATCCGGATGGAGCACCCGTGGTGGAAATCGAGGAGCCAGAA
AACTTTGAGGACATGTTTGAAACGCGCCTCCTGGAACACCTGCAAAAGAC
AATTGAGGAGAACCTGGGCATGGAGATGATCTTTTCGCTGGTAAGCAGCG
CCCAGGAGTGGCTGAACGAGCGGTGGGATGAACACAAGTTCCACCAGGAG
GAACTGCGAGAGCAGAAGCTGCGGGAAATCGAAGAGGAGGAACGCAAGAA
GTTTGAGGGCACCCGTGTGACGGTGGAGTCCTTCCTCAAATGGAAGCTCG
AATTCGAGGAGAGCACCGGCATTGCCGCCAAGCGGGAGAAGAACAATGTG
TCCAAGAAGCAGACCGGACGCGAACTCTTTATGTGCGACAACACGCTCAA
CGATTCGGATATCAAGTTCCTCCTGGAGGCGGGTGAAAACATTGAAAATG
TCAAAATCGATGAGACGCTGTTCCAGGATATTGGCGAATTGGATTTGGAT
GACGATGATGATGAGGATTGGGTGCCCGGGGCGGACGACGACGACGATGC
AAGCTTTCTAGACCAT

BO23946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5515-RD 735 CG5515-PD 1..732 17..748 3660 100 Plus
CG5515-RC 735 CG5515-PC 1..732 17..748 3660 100 Plus
CG5515-RB 735 CG5515-PB 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5515-RD 922 CG5515-RD 109..840 17..748 3660 100 Plus
CG5515-RC 982 CG5515-RC 169..900 17..748 3660 100 Plus
CG5515-RB 1057 CG5515-RB 244..975 17..748 3660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24187806..24188461 748..93 3280 100 Minus
3R 32079331 3R 24188516..24188591 92..17 380 100 Minus
Blast to na_te.dros performed 2014-11-27 08:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 367..430 381..444 122 65.6 Plus

BO23946.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:40 Download gff for BO23946.complete
Subject Subject Range Query Range Percent Splice Strand
CG5515-RB 222..953 17..750 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:54 Download gff for BO23946.complete
Subject Subject Range Query Range Percent Splice Strand
CG5515-RA 306..1037 17..750 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:40 Download gff for BO23946.complete
Subject Subject Range Query Range Percent Splice Strand
CG5515-RB 244..975 17..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:40 Download gff for BO23946.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24187804..24188461 93..750 99 <- Minus
3R 24188516..24188591 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:54 Download gff for BO23946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20013526..20014183 93..750 99 <- Minus
arm_3R 20014238..20014313 17..92 100   Minus

BO23946.pep Sequence

Translation from 16 to 766

> BO23946.pep
MSRNYKEDQTNEVEALDSIYCGDMEILATEPHHKFQIPIATEEYSSEEPE
KGLACKLVFTFTATYPDGAPVVEIEEPENFEDMFETRLLEHLQKTIEENL
GMEMIFSLVSSAQEWLNERWDEHKFHQEELREQKLREIEEEERKKFEGTR
VTVESFLKWKLEFEESTGIAAKREKNNVSKKQTGRELFMCDNTLNDSDIK
FLLEAGENIENVKIDETLFQDIGELDLDDDDDEDWVPGADDDDDASFLDH

BO23946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5515-PD 244 CG5515-PD 1..244 1..244 1284 100 Plus
CG5515-PC 244 CG5515-PC 1..244 1..244 1284 100 Plus
CG5515-PB 244 CG5515-PB 1..244 1..244 1284 100 Plus
CG5515-PA 244 CG5515-PA 1..244 1..244 1284 100 Plus
CG15605-PA 152 CG15605-PA 25..152 2..125 159 30.2 Plus