BO23950.complete Sequence
391 bp assembled on 2010-04-15
GenBank Submission: KX794488
> BO23950.complete
GAAGTTATCAGTCGACATGCGAGATGTGGACGACAAGATTATATATGCAC
TAAATGCCCTGCCAACGGAGTCGTTTAAGGGTCAAGTGAACAGTGAAAGC
ACCTGTCGCGATCTGTACGCGAAGCTCCAGGAGTCACACTTGGCCAGGCA
AGAAAGCATACGCAGTTGCATAACAATTTCGGCTAGTAATCTGAAGAAGC
TAAGGGAAAAGCGGGAGACCCAGCCGGATGATGTGGATACGGATAACCAG
TTTAGGGCGGAGCAGCGCAAGCTGCGGGTTCTCCAGGCCGAGCTCAATGT
CGAGGACATCATTAAAGATCGTTCCTACAAGACCTTCAATGAACGATGCC
GGTCCTATTTTCATGCTGGCCAAGCAAGCTTTCTAGACCAT
BO23950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15881-RC | 360 | CG15881-PC | 1..357 | 17..373 | 1785 | 100 | Plus |
| CG15881-RA | 411 | CG15881-PA | 52..408 | 17..373 | 1785 | 100 | Plus |
| CG15881-RB | 360 | CG15881-PB | 1..357 | 17..373 | 1785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15881-RC | 671 | CG15881-RC | 170..526 | 17..373 | 1785 | 100 | Plus |
| CG15881-RA | 660 | CG15881-RA | 159..515 | 17..373 | 1785 | 100 | Plus |
| CG15881-RB | 1642 | CG15881-RB | 1141..1497 | 17..373 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19806321..19806452 | 17..148 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 19806509..19806632 | 148..271 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 19806684..19806787 | 270..373 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:14:43 has no hits.
BO23950.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:49 Download gff for
BO23950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15881-RB | 1141..1497 | 17..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:55 Download gff for
BO23950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15881-RB | 1141..1497 | 17..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:54 Download gff for
BO23950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15881-RB | 1141..1497 | 17..375 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:54 Download gff for
BO23950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19806321..19806452 | 17..148 | 100 | -> | Plus |
| 3L | 19806510..19806632 | 149..271 | 100 | -> | Plus |
| 3L | 19806686..19806787 | 272..375 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:55 Download gff for
BO23950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19799421..19799552 | 17..148 | 100 | -> | Plus |
| arm_3L | 19799610..19799732 | 149..271 | 100 | -> | Plus |
| arm_3L | 19799786..19799887 | 272..375 | 98 | | Plus |
BO23950.pep Sequence
Translation from 16 to 391
> BO23950.pep
MRDVDDKIIYALNALPTESFKGQVNSESTCRDLYAKLQESHLARQESIRS
CITISASNLKKLREKRETQPDDVDTDNQFRAEQRKLRVLQAELNVEDIIK
DRSYKTFNERCRSYFHAGQASFLDH
BO23950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15881-PC | 119 | CG15881-PC | 1..119 | 1..119 | 607 | 100 | Plus |
| CG15881-PB | 119 | CG15881-PB | 1..119 | 1..119 | 607 | 100 | Plus |
| CG15881-PA | 136 | CG15881-PA | 18..136 | 1..119 | 607 | 100 | Plus |
