BO23956.complete Sequence
1165 bp assembled on 2010-04-15
GenBank Submission: KX797458
> BO23956.complete
GAAGTTATCAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGA
AGCTGAAGTACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAAC
ATGCCGCAGCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCAC
GGTGCCGCCTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCAT
TCGGCGGTGTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAG
GATAGCGAGGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCT
GGACATGGAGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGG
GCAACTACAGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAG
CTGCGCGCCCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGC
CATCGCCTTGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTT
TCCACGCTAAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCC
TGCATTCGGGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGC
TGGCTACAAGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGC
TGGCTGCCCATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAG
ACAGACGAGTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCA
GCATCGCTTGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAAC
GCCAGCGGGATCAGAGGCGCGCACGTAAGGAGCAGGAAAAGCACAATGCC
AGCTCTGGTGGATCATCTGGAGAATTTTCCGGTGGGAATCCTGGTAACGG
AAATATGTCTGATATACTGGGCGCCATGTCAGATCCCGAGGTGTCAGCCG
CCATTCAGGACATTTTGTCAAATCCGGGTAACATCACAAAGTACGCGTCG
AACCCGAAGATATACAACCTTATCAAGAAGATTGTGCCCGGTGGAGATGT
GGGTGCTGCCTTTGGCCAAGCGGGTGAAAAGGCTGGAAAGCCGAGCGAGC
CTAAGCCTAAAAAGGATTCCGCCGACTTCGTCGATGACGGTTTGGACGCA
AGCTTTCTAGACCAT
BO23956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HIP-RA | 1134 | CG32789-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
| HIP-R-RD | 1134 | CG2947-PD | 1..1131 | 17..1147 | 5640 | 99.9 | Plus |
| HIP-R-RB | 1134 | CG2947-PB | 1..1131 | 17..1147 | 5640 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HIP-RA | 2050 | CG32789-RA | 98..1228 | 17..1147 | 5655 | 100 | Plus |
| HIP-R-RD | 2006 | CG2947-RD | 64..1194 | 17..1147 | 5640 | 99.9 | Plus |
| HIP-R-RB | 2065 | CG2947-RB | 123..1253 | 17..1147 | 5640 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3790755..3791403 | 311..959 | 3245 | 100 | Plus |
| X | 23542271 | X | 3799838..3800486 | 311..959 | 3245 | 100 | Plus |
| X | 23542271 | X | 3800558..3800748 | 957..1147 | 955 | 100 | Plus |
| X | 23542271 | X | 3791475..3791665 | 957..1147 | 940 | 99.5 | Plus |
| X | 23542271 | X | 3799247..3799419 | 17..189 | 865 | 100 | Plus |
| X | 23542271 | X | 3790164..3790336 | 17..189 | 865 | 100 | Plus |
| X | 23542271 | X | 3790416..3790541 | 189..314 | 630 | 100 | Plus |
| X | 23542271 | X | 3799499..3799624 | 189..314 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:53:04 has no hits.
BO23956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:54 Download gff for
BO23956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32789-RA | 100..1230 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:15 Download gff for
BO23956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-RA | 100..1230 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:37 Download gff for
BO23956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-RA | 98..1228 | 17..1149 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:37 Download gff for
BO23956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3799247..3799419 | 17..189 | 100 | -> | Plus |
| X | 3799500..3799621 | 190..311 | 100 | -> | Plus |
| X | 3799839..3800485 | 312..958 | 100 | -> | Plus |
| X | 3800560..3800748 | 959..1149 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:15 Download gff for
BO23956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3693280..3693452 | 17..189 | 100 | -> | Plus |
| arm_X | 3693533..3693654 | 190..311 | 100 | -> | Plus |
| arm_X | 3693872..3694518 | 312..958 | 100 | -> | Plus |
| arm_X | 3694593..3694781 | 959..1149 | 98 | | Plus |
BO23956.pep Sequence
Translation from 16 to 1165
> BO23956.pep
MAFTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQ
FNGGSAGGKCPFGGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGV
IEADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYT
KAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFR
GRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPNAKKIEQHRLKQ
ERRQAERKIKERQRDQRRARKEQEKHNASSGGSSGEFSGGNPGNGNMSDI
LGAMSDPEVSAAIQDILSNPGNITKYASNPKIYNLIKKIVPGGDVGAAFG
QAGEKAGKPSEPKPKKDSADFVDDGLDASFLDH
BO23956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HIP-R-PD | 377 | CG2947-PD | 1..377 | 1..377 | 1955 | 100 | Plus |
| HIP-R-PB | 377 | CG2947-PB | 1..377 | 1..377 | 1955 | 100 | Plus |
| HIP-R-PA | 377 | CG2947-PA | 1..377 | 1..377 | 1955 | 100 | Plus |
| HIP-PA | 377 | CG32789-PA | 1..377 | 1..377 | 1955 | 100 | Plus |
