BO23957.complete Sequence
478 bp assembled on 2010-04-15
GenBank Submission: KX798126
> BO23957.complete
GAAGTTATCAGTCGACATGGCTTCTGGTGTAACTGTGTCTGATGTCTGCA
AGACTACATACGAGGAAATAAAGAAGGACAAAAAGCATCGCTATGTCATC
TTTTACATTCGCGATGAAAAGCAGATTGATGTGGAGACTGTGGCAGATCG
CAACGCCGAGTACGACCAGTTTCTAGAAGATATCCAGAAATGCGGACCTG
GAGAGTGCCGGTACGGACTGTTCGATTTCGAGTACATGCACCAGTGTCAA
GGCACCTCTGAGAGTTCAAAGAAGCAAAAGCTGTTCCTTATGTCGTGGTG
TCCCGATACTGCCAAGGTCAAGAAGAAGATGTTGTACTCCAGCTCCTTCG
ATGCTCTCAAGAAGTCGCTCGTGGGCGTCCAAAAGTATATACAAGCCACT
GATCTTTCCGAAGCCTCCCGGGAAGCCGTCGAGGAGAAACTCCGGGCCAC
CGACCGCCAAGCAAGCTTTCTAGACCAT
BO23957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsr-RA | 447 | CG4254-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsr-RA | 735 | CG4254-RA | 138..581 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24044989..24045183 | 213..19 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 24044607..24044752 | 460..315 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 24044812..24044920 | 318..210 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:43:36 has no hits.
BO23957.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:55 Download gff for
BO23957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsr-RA | 169..612 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:46 Download gff for
BO23957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsr-RA | 138..581 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:31 Download gff for
BO23957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsr-RA | 138..581 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:31 Download gff for
BO23957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24044814..24044919 | 211..316 | 100 | <- | Minus |
| 2R | 24044992..24045184 | 17..210 | 99 | | Minus |
| 2R | 24044605..24044750 | 317..462 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:46 Download gff for
BO23957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19932128..19932273 | 317..462 | 98 | <- | Minus |
| arm_2R | 19932337..19932442 | 211..316 | 100 | <- | Minus |
| arm_2R | 19932515..19932707 | 17..210 | 99 | | Minus |
BO23957.pep Sequence
Translation from 16 to 478
> BO23957.pep
MASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAEYD
QFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAK
VKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEKLRATDRQAS
FLDH
BO23957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsr-PA | 148 | CG4254-PA | 1..148 | 1..148 | 771 | 100 | Plus |
| CG6873-PA | 148 | CG6873-PA | 1..148 | 1..148 | 434 | 52.7 | Plus |
