BO23958.complete Sequence
1606 bp assembled on 2010-05-12
GenBank Submission: KX796532
> BO23958.complete
GAAGTTATCAGTCGACATGGCCGCCCTTGAAAAGAACGCTTCGGAGAACT
TCAAGCAAGTGCAATTGAAGAAATTGACGGTTCCTTCCATGGAGGCAACA
ACAAAACGCGCGGCCTTGGGCGATTTGCAGAATCGCGGCATAAGTCGTCC
CATCGCAGCGAAGGATGCGGCACAGAAAGACTCCAAGGATCTCAAGCTCA
CAGACGCCCTGCGCAATGCCAAAGCTCGGGTGGACAGCCACTGGAAGAAA
CAGCCACTGGGCAGCACCAATGGCAATGGCAATGGCGCCGTTCCGCCCAA
GGTCAACGAGGGGGGCGTGTCGGCGTTTTTGCGTTCGAATTCGGTGCGCA
ATCGCGTTCCGACCAAGACCACTGTAGAACCCACTAAAGTTACAGTCAAG
TCCAGTTCTTCCGAGAACGTGAACGAGCCCACCTTAAAGCGCGAGGACAG
CAATCTGTCGAAGAAGTCGCTGACCAAACTGCGTGCCGCTTTGGCCAAAC
CCGTGATGGGAGTTTCAGGAATTCGACGGGAACCAGTAGCTGTTTCCCGC
AAAGAGGCAGAGACCAAGAAGGAACTGCCAGAAACCAAGAAGGACTCACT
GGAAGTGAAAAAGGATGCGACCAGGATGCCCCTTATTAGGGGCAACAGTG
CAGTCACTACGACCACATCTACGATGCCCACCACCATGTCCCTTTCCAGC
AAGCGCTTGGCTGGAATCGAGGACATTGATGCCAATGACAAGGAGAACCT
GGTACTGGTCTCCGAATATGTAAACGACATCTACGACTACTTGTATCAGG
TGGAGCTGGAGCAGCCCATTCACAAGGATCACCTGGCCGGACAGAAGGAG
GTGTCCCACAAGATGCGAGCCGTGCTGATCGATTGGATCAACGAAGTCCA
CCTGCAGTTCCATCTGGCTGCAGAGACCTTCCAGCTGGCGGTGGCTATCA
TTGATCGCTACCTGCAGGTGGTCAAGGACACCAAACGCACGTACTTGCAA
TTGGTGGGAGTGACAGCACTCTTCATAGCCACCAAGTACGAGGAGCTGTT
CCCGCCGGCAATCGGAGATTTCGTCTTCATCACGGACGACACCTACACTG
CCCGGCAGATCCGACAGATGGAGCTGCAAATCTTCAAGGCCATCGACTGT
AATCTGTCGCGTCCGCTGCCGATTCACTTCCTTCGACGCTACTCGAAGGC
TGCTGGCGCCGAGGACGAGCACCATACGATGTCCAAGTACTTCATCGAGT
TAGCTTCCGTGGACTACGAAATGGCCACTTACAGGCCATCGGAGATTGCA
GCTGCCTCACTGTTCCTGTCGCTGCACTTGCTCAATGGAAACCACCGGGC
CGGTACAGGATTCAACGACCGTCACTGGACGCCCACTCTGACCTTCTACT
CGCGATACTCGGCCGCGCACTTGCGTCCGATTACCCGGCTGATCGCGAAA
CTGGCCCGGGACGCTCCTCAGGCCAAGCTGAAGGCCATCTACAACAAGTA
CCAGGGCAGCAAGTTCCAGAAGATCGCGCTGCGAACGGAGCTGACCGGTG
CGCTGATGGACTCGATTGTGGGCCAGAGCCAGAGGAAAGCAAGCTTTCTA
GACCAT
BO23958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-RB | 1575 | CG3510-PB | 1..1572 | 17..1588 | 7860 | 100 | Plus |
| CycB-RA | 1593 | CG3510-PA | 35..1590 | 33..1588 | 7780 | 100 | Plus |
| CycB-RE | 1587 | CG3510-PE | 35..1584 | 33..1588 | 7655 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-RB | 2556 | CG3510-RB | 209..1780 | 17..1588 | 7860 | 100 | Plus |
| CycB-RA | 2633 | CG3510-RA | 302..1857 | 33..1588 | 7780 | 100 | Plus |
| CycB-RC | 2548 | CG3510-RC | 217..1772 | 33..1588 | 7780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22804660..22805568 | 1294..386 | 4545 | 100 | Minus |
| 2R | 25286936 | 2R | 22804297..22804592 | 1588..1293 | 1480 | 100 | Minus |
| 2R | 25286936 | 2R | 22805667..22805875 | 389..181 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 22805940..22806087 | 180..33 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:04:02 has no hits.
BO23958.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:47 Download gff for
BO23958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RB | 262..1833 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:52 Download gff for
BO23958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RB | 209..1780 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:00 Download gff for
BO23958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RB | 209..1780 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:00 Download gff for
BO23958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22804295..22804590 | 1295..1590 | 99 | <- | Minus |
| 2R | 22804660..22805564 | 390..1294 | 100 | <- | Minus |
| 2R | 22805667..22805875 | 181..389 | 100 | <- | Minus |
| 2R | 22805940..22806085 | 35..180 | 100 | <- | Minus |
| 2R | 22806274..22806291 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:52 Download gff for
BO23958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18691800..18692095 | 1295..1590 | 99 | <- | Minus |
| arm_2R | 18692165..18693069 | 390..1294 | 100 | <- | Minus |
| arm_2R | 18693172..18693380 | 181..389 | 100 | <- | Minus |
| arm_2R | 18693445..18693590 | 35..180 | 100 | <- | Minus |
| arm_2R | 18693779..18693796 | 17..34 | 100 | | Minus |
BO23958.pep Sequence
Translation from 16 to 1606
> BO23958.pep
MAALEKNASENFKQVQLKKLTVPSMEATTKRAALGDLQNRGISRPIAAKD
AAQKDSKDLKLTDALRNAKARVDSHWKKQPLGSTNGNGNGAVPPKVNEGG
VSAFLRSNSVRNRVPTKTTVEPTKVTVKSSSSENVNEPTLKREDSNLSKK
SLTKLRAALAKPVMGVSGIRREPVAVSRKEAETKKELPETKKDSLEVKKD
ATRMPLIRGNSAVTTTTSTMPTTMSLSSKRLAGIEDIDANDKENLVLVSE
YVNDIYDYLYQVELEQPIHKDHLAGQKEVSHKMRAVLIDWINEVHLQFHL
AAETFQLAVAIIDRYLQVVKDTKRTYLQLVGVTALFIATKYEELFPPAIG
DFVFITDDTYTARQIRQMELQIFKAIDCNLSRPLPIHFLRRYSKAAGAED
EHHTMSKYFIELASVDYEMATYRPSEIAAASLFLSLHLLNGNHRAGTGFN
DRHWTPTLTFYSRYSAAHLRPITRLIAKLARDAPQAKLKAIYNKYQGSKF
QKIALRTELTGALMDSIVGQSQRKASFLDH
BO23958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-PB | 524 | CG3510-PB | 1..524 | 1..524 | 2642 | 100 | Plus |
| CycB-PA | 530 | CG3510-PA | 11..530 | 5..524 | 2618 | 99.6 | Plus |
| CycB-PE | 528 | CG3510-PE | 11..528 | 5..524 | 2596 | 99.2 | Plus |
| CycB-PC | 500 | CG3510-PC | 1..500 | 25..524 | 2527 | 100 | Plus |
| CycB3-PB | 575 | CG5814-PB | 288..552 | 234..504 | 405 | 36.1 | Plus |
