BO23964.complete Sequence
2707 bp assembled on 2010-05-12
GenBank Submission: KX796113
> BO23964.complete
GAAGTTATCAGTCGACATGGGTCGGAAGGCTGAATACAGTGAGAAACCGA
AAAAGGGACCTGGGCGCAAGGCGCGCAAGCAAGGACCGCCTGTTTTTCGC
AAACAATCGTTTGCTCCCATGGAAGAGGAGGACAAGAAGCTTTCCCACCG
ACAGAAGCAGAGGTTCGTTAAGCGAGAGCAAAAGAAAGTAGTCCAGAAGG
CCAAACTACAGGAGAAGAGGGCCAAGGGAAAGTTACCACAACCGGCTAAG
CGGAAGACGGCCTACAACAGCGACAGCGATCCTGAGGATAATGAAGAGGA
ACCACAGGTTGCATCCTCCGATGAGGAGGTGCCTCAACTGGTGCCGGCTC
CGAAGGGCCAGAAAGCTACAGCTCCCAAGGGTTTTACAGATGATAATGAT
GCCTGGCTGAAGCCCAAGAAGCAACAGAAGCAGCCAGAAACGGAGTCCGA
GGAGGAGGAGGAGGAGGATGAGGAGTCGGAGGAGGACTCCGAAGATGAGT
TGGGAGAAGAATGTGAAGAGGAAGAGGAGGGAGACGATGAGGAAGGATTG
GAATCTGATGATGATACCGCTCAGGTTGGCAAGCTGGCCGATCTATCCGA
CGATGATGATGCCAACTCCGACGATGACTTTGACATATCTGGCGAGGAAG
ATGGTGCTCAGGCAGACAGTGATGAAGAGGAGGATGAGGACGACGACGAT
GATGATGATGATGATGATGATGACAAGCTGCCCATCGAGCGGGCTAACAA
GAAGTTGAAAAAGCGCGAGGCAGAGGAAGCCCAACTGGCCGACGACGAAA
TGTTGGAAACCGTTGACAAGCAGGATGTTTTCCAGCTACCCGTCGAAGGC
GAAGAAACCGAGAAGGACCTAACCCTGCAGGAAGTGCAACAGCGCATAAA
GGACGTCAGTCTGGTTCTTTCCGACTTCAAAAGGTATCGTCAAGCGGATA
GGTCTCGCGGGGAGTACATCGATTTGCTGCGCAGGGATCTGTGTTTGTAT
TACAGCTACAACGAATTTTTGATGGAGAAGCTGATGGATATGTTGCCGCT
GACAGAGCTAATGGAATATCTGGAGGCCTCAGAGATTGCTCGTCCCCTAA
CCATACGCACCAATACTCTAAAAACACGTCGTAGGGATTTGGCCGGAGCT
CTGATCAATCGTGGCGTCAACTTGGATCCCCTTGGTAAATGGACGAAAGT
TGGATTGGTTGTCTTTAACTCACAGGTGCCACTGGGTGCAACTCCAGAGT
ATCTGGCTGGCCACTACATGATCCAGGGCGCCTCTTCGCTGTTGCCTGTA
ATGGCACTCGCCCCGCAAGAGAACGAACGCATCCTGGACATGTGCTCCGC
CCCAGGTGGAAAGGGATCCCACATCGCAAGCATCATGAAGAACACTGGTG
TGCTCTTCGCCAACGATTCTAACAGGGATCGCATCAAGGCCATTGTTGCC
AATTTCCATCGCCTGGGAATTGTAAATGCAGTGGTCAGCTGCGAGGATGG
CACTAAGTTCCGGAATATTATGACTGGCTTTGACCGTGTCCTGCTGGATG
CTCCGTGCACTGGAACTGGCGTCGTCTCTAAGGATCCCAGTGTGAAGACC
ACCAAGTCGGAAGTAGATGTACAAAGGTGCTACAACCTGCAGAGGAAGCT
TCTGCTGACTGCCATAGATTGTACGGATGCGAAGTCATCAACTGGCGGCT
ACATTGTATACTCAACTTGTTCGGTGTTGCCCGAGGAGAACGAATGGGTC
ATCGACTATGCACTGAAGAAGCGAAATGTCAAACTTGTGCCCACTGGTCT
GGACTTCGGCGTGGAGGGCTTTACCAAATTCCGTCAGCATCGGTTCCATC
CTAGCTTAAACCTTACCAAGCGCTACTATCCGCACACCCACAACATGGAC
GGGTTCTACGTGGCCAAGCTCAAGAAATTCTCCAACACCATACCCATAAC
TAAGGAGCAGCAGGAGGAGGATGAAAAGCAGCTGGATGAGGCCATCGAAG
CGGACGCCACTACAGAAGCGGCTGCGGAGTCTGAGGAGGTGGAGGAGGAG
GTAGCGTCAAAGGAGAAGGGTCCCCGAAAACTGCTTGGAAAGCGCGCCGG
AAAACCCAGTTTCACCGAAATCGAACAGGAACTGAAGAAAAAGAAGCGGG
AAGAGAGCAAGACCAAGTATGTGGCCAAGGTGTTTGAGCAGCCTGTCAAA
AAGCCAAAGCCAGAAAAGCCAGCAGAGAAGAAAAATGAGAAATCCCAGGC
ACCGGACAAGCAAACAAATTCAAGCGAGTCACCTTCCAAGTCTGCACCTA
AACAAAAACAAACCAATGGGAAAACCACTGTTTCCAATTCAGATGCGAAA
TCATTCAATAAAAAGAACAAAGGATCGCAACCCAAGGAAAATGGAGCCGG
ATCACCAGCTAAACCAGATGACAATAAGCCAACAACCAATGGCACAAACT
CCCCTAGCAAATCAGCAATTAAGGAAACGAAAACGAAGCCACAGCCGAAA
GGAAAACAGTCGCCCAAGGGAAACGCCAAACTGGCCAAGGCGCCGCGAGT
GGATATCGACGATGTGCCCATTCTCGAGGGAAAACCCATCAAGAAGCAGA
ACAAGCTGAAGCAAAAATCCAAACAGATCGGCCAGCTGAAAAAGTCCACG
GCGGGTGCGAATGCGGGAAAGAAGCAAAAGTTCAAGAAGGCAAGCTTTCT
AGACCAT
BO23964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8545-RA | 2676 | CG8545-PA | 1..2673 | 17..2689 | 13365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8545-RA | 2949 | CG8545-RA | 103..2775 | 17..2689 | 13365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12469942..12471548 | 1083..2689 | 8035 | 100 | Plus |
| 2R | 25286936 | 2R | 12468911..12469882 | 113..1084 | 4860 | 100 | Plus |
| 2R | 25286936 | 2R | 12468753..12468849 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:04:07 has no hits.
BO23964.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:48 Download gff for
BO23964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8545-RA | 114..2786 | 17..2691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:55 Download gff for
BO23964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8545-RA | 103..2775 | 17..2691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:01 Download gff for
BO23964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8545-RA | 103..2775 | 17..2691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:01 Download gff for
BO23964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12468753..12468849 | 17..113 | 100 | -> | Plus |
| 2R | 12468912..12469882 | 114..1084 | 100 | -> | Plus |
| 2R | 12469944..12471548 | 1085..2691 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:55 Download gff for
BO23964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8356258..8356354 | 17..113 | 100 | -> | Plus |
| arm_2R | 8356417..8357387 | 114..1084 | 100 | -> | Plus |
| arm_2R | 8357449..8359053 | 1085..2691 | 99 | | Plus |
BO23964.pep Sequence
Translation from 16 to 2707
> BO23964.pep
MGRKAEYSEKPKKGPGRKARKQGPPVFRKQSFAPMEEEDKKLSHRQKQRF
VKREQKKVVQKAKLQEKRAKGKLPQPAKRKTAYNSDSDPEDNEEEPQVAS
SDEEVPQLVPAPKGQKATAPKGFTDDNDAWLKPKKQQKQPETESEEEEEE
DEESEEDSEDELGEECEEEEEGDDEEGLESDDDTAQVGKLADLSDDDDAN
SDDDFDISGEEDGAQADSDEEEDEDDDDDDDDDDDDKLPIERANKKLKKR
EAEEAQLADDEMLETVDKQDVFQLPVEGEETEKDLTLQEVQQRIKDVSLV
LSDFKRYRQADRSRGEYIDLLRRDLCLYYSYNEFLMEKLMDMLPLTELME
YLEASEIARPLTIRTNTLKTRRRDLAGALINRGVNLDPLGKWTKVGLVVF
NSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSAPGGKG
SHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRN
IMTGFDRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAI
DCTDAKSSTGGYIVYSTCSVLPEENEWVIDYALKKRNVKLVPTGLDFGVE
GFTKFRQHRFHPSLNLTKRYYPHTHNMDGFYVAKLKKFSNTIPITKEQQE
EDEKQLDEAIEADATTEAAAESEEVEEEVASKEKGPRKLLGKRAGKPSFT
EIEQELKKKKREESKTKYVAKVFEQPVKKPKPEKPAEKKNEKSQAPDKQT
NSSESPSKSAPKQKQTNGKTTVSNSDAKSFNKKNKGSQPKENGAGSPAKP
DDNKPTTNGTNSPSKSAIKETKTKPQPKGKQSPKGNAKLAKAPRVDIDDV
PILEGKPIKKQNKLKQKSKQIGQLKKSTAGANAGKKQKFKKASFLDH
BO23964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8545-PA | 891 | CG8545-PA | 1..891 | 1..891 | 4597 | 100 | Plus |
| CG11109-PA | 358 | CG11109-PA | 129..357 | 418..637 | 245 | 31.7 | Plus |
| CG11109-PB | 439 | CG11109-PB | 210..438 | 418..637 | 245 | 31.7 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 797..980 | 84..275 | 225 | 27.6 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 797..980 | 84..275 | 225 | 27.6 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 693..909 | 37..270 | 223 | 27.5 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 769..1012 | 84..328 | 192 | 24.6 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 685..889 | 85..284 | 183 | 24.4 | Plus |
