BO23965.complete Sequence
1042 bp assembled on 2010-04-15
GenBank Submission: KX793939
> BO23965.complete
GAAGTTATCAGTCGACATGGGTTTCATCTTCGGTTGGCTGTCGACCGAGC
ACTATGTGCGCGACATCTTCCTCATGACTTCAGTGGCCGCCATAGTGGCC
ACCCTGATGAGCATTCGGTTCTATCTGCGCATCACGGCGGGACGATGTTT
CACCGAGACAAAGATGGAGGGCAAGACAGTCATTATCACAGGCGCCAACA
GCGGAATTGGCAAGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCCCGC
ATCATCATGGCCTGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGATGA
GATCGTCAAGGAGACGAAGAACAACAAGATCCTAGTCAAGAAACTGGATC
TGGGCTCCCAGAAGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAGACC
GAGCCCAAGATCGATGTGCTTATCCACAATGCCGGCATGGCTCTGGCCTT
CCGCGGACAGACGAGTGAGGATGGCGTGGAGCTGACCATGGCCACCAATC
ACTATGGACCCTTCCTGCTGACGCATCTGCTCATCGATGTACTAAAGAAG
AGCGCGCCGGCTCGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCTGTC
GTCGGTTAACCTGGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTGCCT
ACTTATACTATGTGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAGCTG
GCCAAGCGGCTGGAGGGCACCAAGGTTACAGTGAATTTCCTGCATCCCGG
CATGATCGACTCGGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACTTGC
CCATGATGGCCATCACCAAGGGATTCTTCAAGACCACCAAGGCCGGCGCC
CAGACCACTATCTATTTGGCCACATCCAATGAGGTGGCCAATGTGTCTGG
AAAGTACTTCATGGACTGCAAGGAGGCCACCCTTAATGCTGCTGCCCTCG
ATGAGGAGAAGGGTCTCAAGATCTGGGAGGAGTCCGTGAAGATTGTCAAG
CTTACGCCCCAGGATCCCAAAATCGCAAGCTTTCTAGACCAT
BO23965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-RD | 1011 | CG7675-PD | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| CG7675-RB | 1011 | CG7675-PB | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| CG7675-RE | 864 | CG7675-PE | 1..861 | 164..1024 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-RD | 1224 | CG7675-RD | 101..1108 | 17..1024 | 5040 | 100 | Plus |
| CG7675-RB | 1272 | CG7675-RB | 149..1156 | 17..1024 | 5040 | 100 | Plus |
| CG7675-RC | 1082 | CG7675-RC | 98..966 | 156..1024 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18378240..18378968 | 1024..296 | 3645 | 100 | Minus |
| 3R | 32079331 | 3R | 18379226..18379366 | 296..156 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 18380213..18380353 | 157..17 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:00:27 has no hits.
BO23965.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:05 Download gff for
BO23965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RB | 146..1153 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:59 Download gff for
BO23965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RB | 146..1153 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:50 Download gff for
BO23965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RB | 149..1156 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:50 Download gff for
BO23965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18378238..18378967 | 297..1026 | 99 | <- | Minus |
| 3R | 18379226..18379364 | 158..296 | 100 | <- | Minus |
| 3R | 18380213..18380353 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:59 Download gff for
BO23965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14203960..14204689 | 297..1026 | 99 | <- | Minus |
| arm_3R | 14204948..14205086 | 158..296 | 100 | <- | Minus |
| arm_3R | 14205935..14206075 | 17..157 | 100 | | Minus |
BO23965.pep Sequence
Translation from 16 to 1042
> BO23965.pep
MGFIFGWLSTEHYVRDIFLMTSVAAIVATLMSIRFYLRITAGRCFTETKM
EGKTVIITGANSGIGKETAKDLAGRGARIIMACRNLETANAVKDEIVKET
KNNKILVKKLDLGSQKSVREFAADIVKTEPKIDVLIHNAGMALAFRGQTS
EDGVELTMATNHYGPFLLTHLLIDVLKKSAPARIVIVASELYRLSSVNLA
KLNPIGTFPAAYLYYVSKFANIYFARELAKRLEGTKVTVNFLHPGMIDSG
IWRNVPFPLNLPMMAITKGFFKTTKAGAQTTIYLATSNEVANVSGKYFMD
CKEATLNAAALDEEKGLKIWEESVKIVKLTPQDPKIASFLDH
BO23965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-PD | 336 | CG7675-PD | 1..336 | 1..336 | 1700 | 100 | Plus |
| CG7675-PB | 336 | CG7675-PB | 1..336 | 1..336 | 1700 | 100 | Plus |
| CG7675-PE | 287 | CG7675-PE | 1..287 | 50..336 | 1448 | 100 | Plus |
| CG7675-PC | 287 | CG7675-PC | 1..287 | 50..336 | 1448 | 100 | Plus |
| CG7675-PA | 287 | CG7675-PA | 1..287 | 50..336 | 1448 | 100 | Plus |
