Clone BO23966 Report

Search the DGRC for BO23966

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:239
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptRpS9-RA
Protein status:BO23966.pep: Imported from assembly
Sequenced Size:619

Clone Sequence Records

BO23966.complete Sequence

619 bp assembled on 2010-04-15

GenBank Submission: KX798689

> BO23966.complete
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGTGTCCGCAAGCAGGTGGTCAACAT
CCCGTCGTTCGTCGTGCGCCTGGACTCCCAGAAGCACATCGACTTCTCCC
TGAAGTCGCCCTTCGGCGGCGGCCGTCCCGGTCGCGTCAAGAGGAAGAAC
CTGAAGAAGAACCAGGGCGGTGGCGGTGGAGCTGCTGAAGAGGAGGAGGA
CGCAAGCTTTCTAGACCAT

BO23966.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-RE 588 CG3395-PE 1..585 17..601 2925 100 Plus
RpS9-RD 588 CG3395-PD 1..585 17..601 2925 100 Plus
RpS9-RA 588 CG3395-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-RE 803 CG3395-RE 27..612 16..601 2930 100 Plus
RpS9-RD 706 CG3395-RD 27..612 16..601 2930 100 Plus
RpS9-RA 734 CG3395-RA 55..640 16..601 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9511052..9511279 243..16 1140 100 Minus
3L 28110227 3L 9510465..9510652 426..239 940 100 Minus
3L 28110227 3L 9509984..9510159 601..426 880 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:44:54 has no hits.

BO23966.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:09 Download gff for BO23966.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RD 28..612 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:38 Download gff for BO23966.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RA 56..640 17..603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:55 Download gff for BO23966.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RA 56..640 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:55 Download gff for BO23966.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9509982..9510158 427..603 98 <- Minus
3L 9510465..9510651 240..426 100 <- Minus
3L 9511056..9511278 17..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:38 Download gff for BO23966.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9503082..9503258 427..603 98 <- Minus
arm_3L 9503565..9503751 240..426 100 <- Minus
arm_3L 9504156..9504378 17..239 100   Minus

BO23966.pep Sequence

Translation from 16 to 619

> BO23966.pep
MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYA
LAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLG
LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVV
RLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQGGGGGAAEEEEDASFLD
H

BO23966.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-PE 195 CG3395-PE 1..195 1..195 985 100 Plus
RpS9-PD 195 CG3395-PD 1..195 1..195 985 100 Plus
RpS9-PA 195 CG3395-PA 1..195 1..195 985 100 Plus
RpS9-PB 137 CG3395-PB 1..137 1..137 685 100 Plus