BO23966.complete Sequence
619 bp assembled on 2010-04-15
GenBank Submission: KX798689
> BO23966.complete
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGTGTCCGCAAGCAGGTGGTCAACAT
CCCGTCGTTCGTCGTGCGCCTGGACTCCCAGAAGCACATCGACTTCTCCC
TGAAGTCGCCCTTCGGCGGCGGCCGTCCCGGTCGCGTCAAGAGGAAGAAC
CTGAAGAAGAACCAGGGCGGTGGCGGTGGAGCTGCTGAAGAGGAGGAGGA
CGCAAGCTTTCTAGACCAT
BO23966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-RE | 588 | CG3395-PE | 1..585 | 17..601 | 2925 | 100 | Plus |
RpS9-RD | 588 | CG3395-PD | 1..585 | 17..601 | 2925 | 100 | Plus |
RpS9-RA | 588 | CG3395-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-RE | 803 | CG3395-RE | 27..612 | 16..601 | 2930 | 100 | Plus |
RpS9-RD | 706 | CG3395-RD | 27..612 | 16..601 | 2930 | 100 | Plus |
RpS9-RA | 734 | CG3395-RA | 55..640 | 16..601 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9511052..9511279 | 243..16 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 9510465..9510652 | 426..239 | 940 | 100 | Minus |
3L | 28110227 | 3L | 9509984..9510159 | 601..426 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:44:54 has no hits.
BO23966.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:09 Download gff for
BO23966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RD | 28..612 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:38 Download gff for
BO23966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RA | 56..640 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:55 Download gff for
BO23966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RA | 56..640 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:55 Download gff for
BO23966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9509982..9510158 | 427..603 | 98 | <- | Minus |
3L | 9510465..9510651 | 240..426 | 100 | <- | Minus |
3L | 9511056..9511278 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:38 Download gff for
BO23966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9503082..9503258 | 427..603 | 98 | <- | Minus |
arm_3L | 9503565..9503751 | 240..426 | 100 | <- | Minus |
arm_3L | 9504156..9504378 | 17..239 | 100 | | Minus |
BO23966.pep Sequence
Translation from 16 to 619
> BO23966.pep
MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYA
LAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLG
LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVV
RLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQGGGGGAAEEEEDASFLD
H
BO23966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-PE | 195 | CG3395-PE | 1..195 | 1..195 | 985 | 100 | Plus |
RpS9-PD | 195 | CG3395-PD | 1..195 | 1..195 | 985 | 100 | Plus |
RpS9-PA | 195 | CG3395-PA | 1..195 | 1..195 | 985 | 100 | Plus |
RpS9-PB | 137 | CG3395-PB | 1..137 | 1..137 | 685 | 100 | Plus |