BO23967.complete Sequence
3715 bp assembled on 2012-04-24
GenBank Submission: KX796171
> BO23967.complete
GAAGTTATCAGTCGACATGGAATTCGACGACGCAGAAAATGGCCTAGGAA
TGGGATTTGGTGGTCGCGGCGTTCTGCGGGAGATCAACAAAAACGATGGC
GGCATTAAGCTGAGTCCGTTGGCGGTGAAGCCCAGTCCCAAGCCAACGAG
CATGGATCAACAGAAGGCAATGGCGGCAGCTCTGGGGCATCAGACGGCGG
TACCCGGTGGACTTAAGCCAGAAGACGACCTCGTTCCAAAGTTTGGAGGT
CTTCCCGAGTTCGATGAGACGCAAATACCGGAACTAGCTCCTTTAAGTAC
CGATATGGATACTCAACTGAAATCCAACCATTCGGATTCGGATGTTTTTG
TCGAGTGTTTATCGCTTCATAGCGAGCGCTACACCGGAGATCGATCGGAG
TTAGAGGCATATTCAAGTGCCCTTAATGATGTTTTGGAGCAGCAGCTGTC
CATGACCTCAGTTTCTACACTGGGAGCTGAATTCAACGATCCTTTGGCAG
TTAGCCAGCACAACAACGTCAGCTATGAAGCCATGGATGTGGATGACCTA
AACGAAACCATGGAAATGTTAAAGGACGTCTTGAATGCGGAAGACCGTCA
TCTTATGCAAACGCATATTCTCAGCGTAACCCAGTCAAAACCAGAGAATA
ATTTTGTGCACTATCATCCAAATCAGGAGCAAAATAGGGTTGAACTAGAC
CAGTTAGCCAAACACTCTAAACCCAATAGTGATGCAAAGGAATCAGAATC
ATTGGTAGAATCAGTACTGTCTGAGGAGTCTGGTACACAATCCTTTGAGC
CGAAGCTCACCTTATCTGCCTTGGACTCTACGAAAGACTTAGCTAAGCAT
CAAGAGGAAATGCAAACAAATACAAAAGATATATTTCAGAAAGAGAAGCA
CCACCCGGTCAGTAGTGCTCAGGTGAAGGACGCACAAAATCCTAAGGAGC
CTGAAAAGGCCTTAAATCTCAAAGAGGCTTCTTCAGAACTGTCCACAAAA
TCAGCAAAATCTCTAGAATACCCTAATCAAGAGAAGCAATTTTCGGTGGC
AGTAGAATCAATGGAGAGACCATGCACTGCCATCAGCCTTGAGCAAAATG
CATCCCCAGCTATGGAGGCAACTGAAGACAGGACTGTGGAGGAGCTTGAT
CAAATGGATGTGGATGAATCCATGAAAGTGGATGATGCCACAGTGCTTAA
CTCATGTCGGCAGGAGCAAATTAATGCTCATTCTCCCGTTTCAAGCAAAT
TTTTCTTAAAACTCTGCGTTCAAAATGATACGGATTGTCAAGATAATAAA
ATGGATCAAAAAACTGCAGGAAAAGAAAGTGCATTAAAGATGACTGAAAT
AGAGCTGCCTGTAGAATCTGTCCCATCAGCTTCGCTCTCACCGCCGACAC
CCGCACTTCAAGCAAAAATTATCGAACTTTCCCTTTCCCCGCCCATACCT
ACACATCGCCCAAAAACAGCGGAGGAACTAGAGTTCCTGGCTTTGAGGGA
GCTGCCTTTGCCTGATGGTGTCTCGACGGCGGGGAAGGTGGAATGTAAGC
AGCTATCACACGGCCTGGTACCCATTGTGGCAGTCTTACCAACGCCACTT
TACTTGGATCTGAAAGGGAATACAACCACTGCAAGCCTTCCAGAACCGAC
TTCGCCCAGTTTCCCCATCAAAGAACCTGCTGAAAAACAGTCCCACTTTC
CACGCTCACCGCGTGCTCAGCTCGAGCAAAAGGACATGCCCTATTTGGAA
GAGGCTGTGGTAGAACGTTCATCACATCGCAAGCAAAGCGATTTCGGAGT
CATAGCGAAATCACCAATAGTCTTTGAGTTAACACAACCGAGTCCTGAGA
AGCAGCACCTCAACGAAACCTTGCCAATGAGCGAGATTTCTCCCACTTCG
TCAAATATGACCTTTGACAGCGGAAGCATTACGGAGGACAAATCACAGAA
GGGTACAGAGAATATTGAGCCTTCTTCCACCCTTGCCGTAAGTCTGGGAT
CGGTTGATGATAAGCAGCGGCGCACTTTCTCGGTGGTTCAGCCCACGAAG
GAAGAGGAGGAGGCCAAATCGCGTCGGACTTTCTGTATGGAAAATGAGAA
CCCTCGACGCACCTTCTGCATGCAGCAGAATGCTTCTCCAGCGGTGGAGG
CTACCGAAGACACCGGGGCTGATGAAGTTATGGATGTGGATATCTCCATG
AGGGCAGATGAAGTAGCCGTGATGAAGTCGCATCAGCAAACTTGGAAGGA
ACGCCAAGCACCAATTTCAAATTCACCACCAATTCCTACTCACCAACGTT
TAAATAGACCTCCTGAGGCGATTTCTCCAGTGTCCCCATTGGGAAATGGC
ACCGTTGTGTTGGAGGAGCAAACTCTCTCTGCTAAAGAGCAAGCCACGCT
AAGTGCCAGCGATGAGAAGGACGATGTTTTCTTGGAGCACTTTGGTGCAA
TTTCCCCAGTTTCGGATGACATGTTTAAAACCAGCAGCGCTTCCAACAAT
CAAGCAAAGTTTAGGGTCAATGCTGATGAAGAAACCGGAGGCAAAGGCGC
TTCTGCGATGATCAGGAAGAGAAGTGGTACAGCTGGCGAGCAGGAAGAGA
TCTTTGATGCCGAATTCCATGATGGCGTCAACAACCAAAACCTAATACTA
AATTCATCAGATTTTGATTATTTGTACACGAAAGGCAGCAATAGTGTGCC
TATTGACCGCAGTTCGCTGCTGTTGAAGTTTGATCCCCTCCTTGGAGCCC
CTGTTCCCGTTAATCATCCGAATCAGCAGGAGCAGGCGCTGCAGAATATT
CTGGGATCGAACCAGCACCAGAACCGGCTCCTTAGCCCAACATTGGAGGA
GCACGAAACAAGTGACGGGAACCAGTCTTTTGGAGTAATATCGAGTGCCA
AAGATACAGCCAAGAAATGGGATTTTAAGCCACCTGTGGATAGAACAAAA
AAGCATGTTAAAATGAGTGTGGACGTCATTGATAACGATTGCAATAAAAC
CTTCGATAATTCCAACACTAATACGGAGGATAAGACGCACAACTACAACG
ATATGGATGAGCTGGAGAAGAAAATCAAAAATGAAGTAACGAGGTCCGAA
GACATTGAAAAGAAGCTCAAGGAGGGAGAGCTGCGCGAGGAGGCTCTGAT
CAAGCGTATTACAGAAAAGGACAAAACAAATGCAAAACTAAACGGTGTCA
TTGAGGCATATGAGAAGGCAATTGCAGAGCTCATTAGTGAGAAGGAGCAG
CAAGCACAGCTTCACGAACGGCAGTTGCAGGAAGTCCAGGCAGACCGGGA
CGCAAATTACCATCACTTAACATCGTTGGAGACGACATTTTCCGATCTGC
ATGTGAAATACGAGAAAAGCAAAGAGATGACCTCGCAGCTTAAAAGTAAC
GAGGAATCGCTTCTGGCAGAGCGAAAGCAGATGATGGACAATCTGCGGTT
GCAGGAACAGCGCTACGACAAGATGAAGAACCATGCCATGCAGCAGCTGG
AAATTGCCAACAAAAAGCTGGACACCTACTCGAGGGAGCATGCCGACGAG
ACGAAAAAACTTAAAGCTTTACTTAAGAAGGAGGAGATCTCGCGGGTCTC
GATGACGGAGCAGCTGCAACAGAAGTCCCGCGAAAACGCTGATCTGCTCA
AGATCTGCGAAGAGCTCATCTATGGCAAGGGACAAGGTGGTAGTAGTGCA
AGCTTTCTAGACCAT
BO23967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tacc-RI | 3684 | CG9765-PI | 1..3681 | 17..3697 | 18405 | 100 | Plus |
| tacc-RA | 3681 | CG9765-PA | 1..3678 | 17..3697 | 18325 | 99.9 | Plus |
| tacc-RK | 3969 | CG9765-PK | 377..3966 | 108..3697 | 17950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tacc-RI | 4596 | CG9765-RI | 173..3854 | 16..3697 | 18410 | 100 | Plus |
| tacc-RA | 4593 | CG9765-RA | 173..3851 | 16..3697 | 18330 | 99.9 | Plus |
| tacc-RK | 5706 | CG9765-RK | 617..4206 | 108..3697 | 17950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4741852..4744182 | 2642..312 | 11655 | 100 | Minus |
| 3R | 32079331 | 3R | 4737473..4737780 | 2950..2643 | 1540 | 100 | Minus |
| 3R | 32079331 | 3R | 4744464..4744667 | 311..108 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 4735154..4735346 | 3697..3505 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 4735641..4735803 | 3355..3193 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 4735408..4735557 | 3504..3355 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 4737023..4737127 | 3192..3088 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 4748791..4748884 | 109..16 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 4737181..4737252 | 3087..3016 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 4737314..4737378 | 3015..2951 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 4539..4612 | 3540..3613 | 117 | 65.3 | Plus |
BO23967.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 11:41:21 Download gff for
BO23967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tacc-RA | 173..3850 | 17..3699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:22 Download gff for
BO23967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tacc-RI | 173..3853 | 17..3699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:59 Download gff for
BO23967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tacc-RI | 174..3854 | 17..3699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:03 Download gff for
BO23967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tacc-RI | 174..3854 | 17..3699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:03 Download gff for
BO23967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4735152..4735346 | 3505..3699 | 98 | <- | Minus |
| 3R | 4735408..4735557 | 3355..3504 | 100 | <- | Minus |
| 3R | 4735642..4735803 | 3193..3354 | 100 | <- | Minus |
| 3R | 4737023..4737127 | 3088..3192 | 100 | <- | Minus |
| 3R | 4737181..4737252 | 3016..3087 | 100 | <- | Minus |
| 3R | 4737314..4737378 | 2951..3015 | 100 | <- | Minus |
| 3R | 4737473..4737780 | 2643..2950 | 100 | <- | Minus |
| 3R | 4741852..4744182 | 312..2642 | 100 | <- | Minus |
| 3R | 4744464..4744665 | 110..311 | 100 | <- | Minus |
| 3R | 4748791..4748883 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:59 Download gff for
BO23967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 560874..561068 | 3505..3699 | 98 | <- | Minus |
| arm_3R | 561130..561279 | 3355..3504 | 100 | <- | Minus |
| arm_3R | 561364..561525 | 3193..3354 | 100 | <- | Minus |
| arm_3R | 562745..562849 | 3088..3192 | 100 | <- | Minus |
| arm_3R | 562903..562974 | 3016..3087 | 100 | <- | Minus |
| arm_3R | 563036..563100 | 2951..3015 | 100 | <- | Minus |
| arm_3R | 563195..563502 | 2643..2950 | 100 | <- | Minus |
| arm_3R | 567574..569904 | 312..2642 | 100 | <- | Minus |
| arm_3R | 570186..570387 | 110..311 | 100 | <- | Minus |
| arm_3R | 574513..574605 | 17..109 | 100 | | Minus |
BO23967.pep Sequence
Translation from 16 to 3715
> BO23967.pep
MEFDDAENGLGMGFGGRGVLREINKNDGGIKLSPLAVKPSPKPTSMDQQK
AMAAALGHQTAVPGGLKPEDDLVPKFGGLPEFDETQIPELAPLSTDMDTQ
LKSNHSDSDVFVECLSLHSERYTGDRSELEAYSSALNDVLEQQLSMTSVS
TLGAEFNDPLAVSQHNNVSYEAMDVDDLNETMEMLKDVLNAEDRHLMQTH
ILSVTQSKPENNFVHYHPNQEQNRVELDQLAKHSKPNSDAKESESLVESV
LSEESGTQSFEPKLTLSALDSTKDLAKHQEEMQTNTKDIFQKEKHHPVSS
AQVKDAQNPKEPEKALNLKEASSELSTKSAKSLEYPNQEKQFSVAVESME
RPCTAISLEQNASPAMEATEDRTVEELDQMDVDESMKVDDATVLNSCRQE
QINAHSPVSSKFFLKLCVQNDTDCQDNKMDQKTAGKESALKMTEIELPVE
SVPSASLSPPTPALQAKIIELSLSPPIPTHRPKTAEELEFLALRELPLPD
GVSTAGKVECKQLSHGLVPIVAVLPTPLYLDLKGNTTTASLPEPTSPSFP
IKEPAEKQSHFPRSPRAQLEQKDMPYLEEAVVERSSHRKQSDFGVIAKSP
IVFELTQPSPEKQHLNETLPMSEISPTSSNMTFDSGSITEDKSQKGTENI
EPSSTLAVSLGSVDDKQRRTFSVVQPTKEEEEAKSRRTFCMENENPRRTF
CMQQNASPAVEATEDTGADEVMDVDISMRADEVAVMKSHQQTWKERQAPI
SNSPPIPTHQRLNRPPEAISPVSPLGNGTVVLEEQTLSAKEQATLSASDE
KDDVFLEHFGAISPVSDDMFKTSSASNNQAKFRVNADEETGGKGASAMIR
KRSGTAGEQEEIFDAEFHDGVNNQNLILNSSDFDYLYTKGSNSVPIDRSS
LLLKFDPLLGAPVPVNHPNQQEQALQNILGSNQHQNRLLSPTLEEHETSD
GNQSFGVISSAKDTAKKWDFKPPVDRTKKHVKMSVDVIDNDCNKTFDNSN
TNTEDKTHNYNDMDELEKKIKNEVTRSEDIEKKLKEGELREEALIKRITE
KDKTNAKLNGVIEAYEKAIAELISEKEQQAQLHERQLQEVQADRDANYHH
LTSLETTFSDLHVKYEKSKEMTSQLKSNEESLLAERKQMMDNLRLQEQRY
DKMKNHAMQQLEIANKKLDTYSREHADETKKLKALLKKEEISRVSMTEQL
QQKSRENADLLKICEELIYGKGQGGSSASFLDH
BO23967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tacc-PI | 1227 | CG9765-PI | 1..1227 | 1..1227 | 6259 | 100 | Plus |
| tacc-PA | 1226 | CG9765-PA | 1..1226 | 1..1227 | 6242 | 99.9 | Plus |
| tacc-PJ | 1213 | CG9765-PJ | 1..1213 | 1..1227 | 6154 | 98.8 | Plus |
| tacc-PN | 1225 | CG9765-PN | 20..1225 | 23..1227 | 6103 | 99.5 | Plus |
| tacc-PL | 1225 | CG9765-PL | 20..1225 | 23..1227 | 6103 | 99.5 | Plus |
