BO23970.complete Sequence
2479 bp assembled on 2010-05-12
GenBank Submission: KX794495
> BO23970.complete
GAAGTTATCAGTCGACATGACCCACAATCTTGGTATGGCGCCATATCGAT
TGCCGGGTCCAGCGGGCGGACTCTGTCCGCCCGATTTTAAGCCGCCGCCT
CCCACGGACATCATCTCGGCGCCGAGCAATCCGAAGAAGCGGCGAAAAAC
CTCAAGTGCCGCCAACTCCGCTGCAGCGGTGGCTGCGGCGGCGGCTGCAG
CAGCTGCTGCGAATTCCATGCAGCAGCAGCAGGCGCCACCCACACCGCAG
GATTTGCTGCCCCCTCCGCCAATGGGAGGCTTCGGAGACACCATTATTGC
CTCGAATCCATTCGACGACAGTCCCCAGGTGTCGGCGATGTCCAGCTCAG
CGGCCGCGGCGATGGCGGCCATGAATCAGATGGGCGGCGGACCAGGAGGT
GGTCACTTTGGCGGCGGTGGACCGGGTGGGCACCCGCACTGGGAAGACCG
CATGGGCATGGGCGGTGGACCTCCTCCCCCGCCTCACATGCATCCCCATA
TGCACCCGCATCATCCAGGCGGACCTATGGGTCACCCACATGGCCCACAT
CCGCACATGGGTGGTCCACCTCCAATGCGAGGAATGAGCCCCATGCACCC
CCATCAAATGGGACCGGGACCAGGCGTCGGACTACCGCCGCATATGAATC
ACGGAAGGCCAGGGGGACCTGGTGGTCCTGGAGGACCCGTCCCAATGGGT
AGTCCCATGGGTGGAATAGCTGGCATGGGCGGCATGAGCCCAATGGGCGG
AATGGGAGGCCCCAGCATATCACCCCATCACATGGGCATGGGTGGTCTGT
CGCCCATGGGAGGCGGTCCCAACGGACCCAATCCGCGAGCCATGCAGGGT
TCACCGATGGGCGGTCCGGGGCAGAACTCGCCAATGAACTCACTGCCTAT
GGGTTCGCCAATGGGCAATCCAATTGGCAGCCCGTTGGGCCCTCCCTCGG
GACCGGGCCCTGGGAATCCCGGCAATACCGGCGGACCACAGCAGCAACAA
CAACAACCTCCGCAGCCACCGATGAACAACGGGCAGATGGGTCCTCCTCC
TCTGCACAGTCCGCTCGGAAACGGACCAACGGGTCATGGCAGTCACATGC
CTGGAGGACCAATCCCAGGACCAGGTCCTGGGCCTGGCGGCCTAGTAGGT
CCCGGTGGCATCTCCCCCGCGCACGGCAATAACCCGGGTGGTTCTGGGAA
CAACATGCTCGGCGGGAATCCCGGCGGCGGCAACAGCAACAACAACGGAA
GCAATACAAGTAACGCCAGCAACAACAATCAAAATCCTCACCTCTCGCCA
GCAGCCGGACGCCTGGGAGTGCCGACGTCGATGCAGTCGAATGGACCTTC
GGTATCATCGGTAGCCTCCTCATCGGTTCCCTCGCCCGCCACGCCCACGC
TCACGCCCACATCGACGGCCACGTCCATGTCCACGTCAGTGCCTACATCC
TCGCCAGCGCCGCCCGCCATGTCACCGCATCACTCGCTAAACAGCGCCGG
CCCGAGTCCGGGCATGCCCAACTCGGGACCCAGCCCGCTGCAGTCACCAG
CCGGACCCAATGGCCCCAATAACAACAACAGCAATAACAACAACGGACCC
ATGATGGGCCAGATGATCCCGAACGCAGTTCCTATGCAGCACCAGCAGCA
CATGGGCGGCGGCCCACCTGGCCACGGGCCCGGACCAATGCCCGGAATGG
GCATGAACCAAATGCTGCCACCGCAGCAACCCTCCCATCTTGGTCCCCCG
CATCCGAATATGATGAACCACCCGCATCATCCGCACCATCATCCTGGCGG
ACCACCGCCGCACATGATGGGTGGACCCGGAATGCACGGCGGTCCTGCTG
GAATGCCTCCTCATATGGGCGGAGGACCTAATCCGCACATGATGGGCGGT
CCGCACGGGAACGCGGGTCCGCACATGGGCCACGGCCACATGGGTGGAGT
ACCAGGTCCAGGACCCGGACCCGGCGGCATGAACGGACCCCCGCATCCGC
ACATGTCCCCGCACCACGGACATCCGCATCACCACCACAATCCGATGGGC
GGCCCAGGTCCAAATATGTTCGGCGGTGGTGGAGGAGGTCCCATGGGTCC
CGGTGGACCGATGGGCAACATGGGGCCCATGGGAGGTGGCCCGATGGGCG
GCCCTATGGGCGTAGGTCCCAAGCCGATGACAATGGGCGGCGGGAAGATG
TACCCGCCGGGACAGCCAATGGTCTTTAATCCGCAGAACCCGAATGCGCC
GCCCATATATCCTTGTGGCATGTGCCACAAGGAGGTGAACGACAACGACG
AAGCCGTGTTCTGTGAATCCGGTTGTAACTTTTTCTTTCACAGAACCTGT
GTTGGCCTGACAGAGGCGGCCTTCCAAATGCTCAACAAGGAGGTGTTTGC
CGAGTGGTGCTGCGACAAGTGCGTGTCTTCCAAGCATATTCCCATGGTCA
AGTTCAAGTGTGCAAGCTTTCTAGACCAT
BO23970.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pygo-RA | 2448 | CG11518-PA | 1..2445 | 17..2461 | 12225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pygo-RA | 4507 | CG11518-RA | 1003..3447 | 17..2461 | 12225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31577304..31579630 | 2343..17 | 11635 | 100 | Minus |
| 3R | 32079331 | 3R | 31576895..31577015 | 2461..2341 | 605 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6819 | 1202..1309 | 171 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6831 | 1199..1277 | 161 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2443 | 1199..1293 | 156 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6866 | 1197..1279 | 154 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2536 | 1222..1306 | 140 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1145 | 1219..1305 | 140 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2399 | 1199..1278 | 139 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2377 | 1225..1277 | 139 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2484 | 1535..1663 | 133 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2658 | 1225..1292 | 130 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6798 | 1225..1277 | 130 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6879 | 1199..1309 | 128 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6768 | 1231..1277 | 127 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1599 | 985..1028 | 123 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6778 | 942..1032 | 122 | 64.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6633 | 986..1022 | 122 | 81.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8089 | 986..1022 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2450 | 1197..1278 | 120 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2369 | 971..1032 | 119 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2948..3014 | 1230..1296 | 119 | 64.2 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 529..596 | 1235..1304 | 119 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6799 | 985..1032 | 118 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6823 | 985..1032 | 116 | 73.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3582..3624 | 1552..1594 | 116 | 74.4 | Plus |
BO23970.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:49 Download gff for
BO23970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pygo-RA | 994..3438 | 17..2463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:58 Download gff for
BO23970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pygo-RA | 994..3438 | 17..2463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:02 Download gff for
BO23970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pygo-RA | 1003..3447 | 17..2463 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:02 Download gff for
BO23970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31576892..31577012 | 2344..2463 | 98 | <- | Minus |
| 3R | 31577304..31579630 | 17..2343 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:58 Download gff for
BO23970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27402614..27402734 | 2344..2463 | 98 | <- | Minus |
| arm_3R | 27403026..27405352 | 17..2343 | 100 | | Minus |
BO23970.pep Sequence
Translation from 16 to 2479
> BO23970.pep
MTHNLGMAPYRLPGPAGGLCPPDFKPPPPTDIISAPSNPKKRRKTSSAAN
SAAAVAAAAAAAAAANSMQQQQAPPTPQDLLPPPPMGGFGDTIIASNPFD
DSPQVSAMSSSAAAAMAAMNQMGGGPGGGHFGGGGPGGHPHWEDRMGMGG
GPPPPPHMHPHMHPHHPGGPMGHPHGPHPHMGGPPPMRGMSPMHPHQMGP
GPGVGLPPHMNHGRPGGPGGPGGPVPMGSPMGGIAGMGGMSPMGGMGGPS
ISPHHMGMGGLSPMGGGPNGPNPRAMQGSPMGGPGQNSPMNSLPMGSPMG
NPIGSPLGPPSGPGPGNPGNTGGPQQQQQQPPQPPMNNGQMGPPPLHSPL
GNGPTGHGSHMPGGPIPGPGPGPGGLVGPGGISPAHGNNPGGSGNNMLGG
NPGGGNSNNNGSNTSNASNNNQNPHLSPAAGRLGVPTSMQSNGPSVSSVA
SSSVPSPATPTLTPTSTATSMSTSVPTSSPAPPAMSPHHSLNSAGPSPGM
PNSGPSPLQSPAGPNGPNNNNSNNNNGPMMGQMIPNAVPMQHQQHMGGGP
PGHGPGPMPGMGMNQMLPPQQPSHLGPPHPNMMNHPHHPHHHPGGPPPHM
MGGPGMHGGPAGMPPHMGGGPNPHMMGGPHGNAGPHMGHGHMGGVPGPGP
GPGGMNGPPHPHMSPHHGHPHHHHNPMGGPGPNMFGGGGGGPMGPGGPMG
NMGPMGGGPMGGPMGVGPKPMTMGGGKMYPPGQPMVFNPQNPNAPPIYPC
GMCHKEVNDNDEAVFCESGCNFFFHRTCVGLTEAAFQMLNKEVFAEWCCD
KCVSSKHIPMVKFKCASFLDH
BO23970.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pygo-PA | 815 | CG11518-PA | 1..815 | 1..815 | 4733 | 100 | Plus |
| osa-PE | 2555 | CG7467-PE | 158..862 | 7..726 | 432 | 27.8 | Plus |
| osa-PC | 2556 | CG7467-PC | 158..862 | 7..726 | 432 | 27.8 | Plus |
| osa-PF | 2559 | CG7467-PF | 158..862 | 7..726 | 432 | 27.8 | Plus |
| osa-PA | 2703 | CG7467-PA | 158..862 | 7..726 | 432 | 27.8 | Plus |
| osa-PE | 2555 | CG7467-PE | 7..835 | 38..736 | 398 | 25.6 | Plus |
| osa-PC | 2556 | CG7467-PC | 7..835 | 38..736 | 398 | 25.6 | Plus |
| osa-PF | 2559 | CG7467-PF | 7..835 | 38..736 | 398 | 25.6 | Plus |
| osa-PE | 2555 | CG7467-PE | 184..875 | 9..636 | 380 | 27.2 | Plus |
| osa-PC | 2556 | CG7467-PC | 184..875 | 9..636 | 380 | 27.2 | Plus |
| osa-PF | 2559 | CG7467-PF | 184..875 | 9..636 | 380 | 27.2 | Plus |
| osa-PE | 2555 | CG7467-PE | 451..965 | 26..511 | 298 | 28.2 | Plus |
| osa-PC | 2556 | CG7467-PC | 451..965 | 26..511 | 298 | 28.2 | Plus |
| osa-PF | 2559 | CG7467-PF | 451..965 | 26..511 | 298 | 28.2 | Plus |
| osa-PE | 2555 | CG7467-PE | 1095..1605 | 97..620 | 291 | 25 | Plus |
| osa-PC | 2556 | CG7467-PC | 1096..1606 | 97..620 | 291 | 25 | Plus |
| osa-PF | 2559 | CG7467-PF | 1099..1609 | 97..620 | 291 | 25 | Plus |
| osa-PE | 2555 | CG7467-PE | 16..671 | 244..751 | 276 | 25.4 | Plus |
| osa-PC | 2556 | CG7467-PC | 16..671 | 244..751 | 276 | 25.4 | Plus |
| osa-PF | 2559 | CG7467-PF | 16..671 | 244..751 | 276 | 25.4 | Plus |
| osa-PE | 2555 | CG7467-PE | 1118..1604 | 200..697 | 265 | 27.9 | Plus |
| osa-PC | 2556 | CG7467-PC | 1119..1605 | 200..697 | 265 | 27.9 | Plus |
| osa-PF | 2559 | CG7467-PF | 1122..1608 | 200..697 | 265 | 27.9 | Plus |
| osa-PE | 2555 | CG7467-PE | 1118..1543 | 83..404 | 185 | 26.8 | Plus |
| osa-PC | 2556 | CG7467-PC | 1119..1544 | 83..404 | 185 | 26.8 | Plus |
| osa-PF | 2559 | CG7467-PF | 1122..1547 | 83..404 | 185 | 26.8 | Plus |
| osa-PE | 2555 | CG7467-PE | 1106..1517 | 443..752 | 175 | 23.7 | Plus |
| osa-PC | 2556 | CG7467-PC | 1107..1518 | 443..752 | 175 | 23.7 | Plus |
| osa-PF | 2559 | CG7467-PF | 1110..1521 | 443..752 | 175 | 23.7 | Plus |
