BO23975.complete Sequence
781 bp assembled on 2010-04-15
GenBank Submission: KX795143
> BO23975.complete
GAAGTTATCAGTCGACATGAGCGCACCTGGCATGGACAAGAGAAAACTGT
CGACATCTGGCGACTCGCTTTACGAGATCTTAGGACTTCCGAAGACAGCC
ACCGGAGATGATATTAAAAAGACTTACCGGAAACTCGCACTCAAATACCA
TCCCGATAAGAACCCGGACAATGTGGATGCGGCTGATAAGTTCAAGGAAG
TCAACCGGGCCCACTCGATATTGAGCGACCAGACGAAGCGCAACATATAC
GACAACTACGGCTCTTTGGGCTTGTACATAGCCGAGCAGTTTGGCGAGGA
GAATGTCAACGCATACTTCGTGGTCACTTCACCGGCTGTAAAGGCGGTGG
TTATCTGCTGTGCCGTGATCACTGGATGCTGTTGTTGCTGCTGCTGCTGC
TGCTGTTGCAACTTCTGCTGCGGCAAGTTCAAGCCGCCGGTCAACGAGTC
GCACGATCAGTATTCACATCTGAATCGCCCCGATGGCAATCGGGAGGGCA
ACGATATGCCAACGCATCTGGGACAGCCGCCACGCCTTGAGGACGTTGAC
CTAGACGACGTTAACTTGGGTGCGGGCGGAGCCCCCGTTACCTCACAGCC
GCGGGAACAGGCCGGAGGACAGCCTGTTTTCGCCATGCCGCCGCCCAGTG
GAGCCGTGGGAGTAAACCCCTTCACCGGCGCCCCTGTAGCAGCTAACGAG
AATACGTCGCTAAACACAACGGAGCAGACCACTTACACGCCAGATATGGT
TAATCAAAAATATGCAAGCTTTCTAGACCAT
BO23975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csp-RF | 750 | CG6395-PF | 1..747 | 17..763 | 3735 | 100 | Plus |
| Csp-RB | 750 | CG6395-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
| Csp-RE | 735 | CG6395-PE | 1..731 | 17..747 | 3640 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csp-RF | 2028 | CG6395-RF | 372..1118 | 17..763 | 3735 | 100 | Plus |
| Csp-RB | 1842 | CG6395-RB | 186..932 | 17..763 | 3735 | 100 | Plus |
| Csp-RE | 2895 | CG6395-RE | 186..916 | 17..747 | 3640 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22271558..22271766 | 539..747 | 1030 | 99.5 | Plus |
| 3L | 28110227 | 3L | 22269572..22269727 | 189..344 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 22269353..22269491 | 52..190 | 695 | 100 | Plus |
| 3L | 28110227 | 3L | 22269787..22269920 | 342..475 | 670 | 100 | Plus |
| 3L | 28110227 | 3L | 22270914..22270977 | 476..539 | 320 | 100 | Plus |
| 3L | 28110227 | 3L | 22267753..22267788 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:46:11 has no hits.
BO23975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:10 Download gff for
BO23975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csp-RB | 493..1239 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:46 Download gff for
BO23975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csp-RB | 186..932 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:21 Download gff for
BO23975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csp-RB | 186..932 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:21 Download gff for
BO23975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22267753..22267787 | 17..51 | 100 | -> | Plus |
| 3L | 22269353..22269491 | 52..190 | 100 | -> | Plus |
| 3L | 22269574..22269726 | 191..343 | 100 | -> | Plus |
| 3L | 22269789..22269920 | 344..475 | 100 | -> | Plus |
| 3L | 22270914..22270976 | 476..538 | 100 | -> | Plus |
| 3L | 22271558..22271762 | 539..743 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:46 Download gff for
BO23975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22262889..22263020 | 344..475 | 100 | -> | Plus |
| arm_3L | 22260853..22260887 | 17..51 | 100 | -> | Plus |
| arm_3L | 22262453..22262591 | 52..190 | 100 | -> | Plus |
| arm_3L | 22262674..22262826 | 191..343 | 100 | -> | Plus |
| arm_3L | 22264014..22264076 | 476..538 | 100 | -> | Plus |
| arm_3L | 22264658..22264862 | 539..743 | 100 | -> | Plus |
BO23975.pep Sequence
Translation from 16 to 781
> BO23975.pep
MSAPGMDKRKLSTSGDSLYEILGLPKTATGDDIKKTYRKLALKYHPDKNP
DNVDAADKFKEVNRAHSILSDQTKRNIYDNYGSLGLYIAEQFGEENVNAY
FVVTSPAVKAVVICCAVITGCCCCCCCCCCCNFCCGKFKPPVNESHDQYS
HLNRPDGNREGNDMPTHLGQPPRLEDVDLDDVNLGAGGAPVTSQPREQAG
GQPVFAMPPPSGAVGVNPFTGAPVAANENTSLNTTEQTTYTPDMVNQKYA
SFLDH
BO23975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csp-PF | 249 | CG6395-PF | 1..249 | 1..249 | 1371 | 100 | Plus |
| Csp-PB | 249 | CG6395-PB | 1..249 | 1..249 | 1371 | 100 | Plus |
| Csp-PE | 244 | CG6395-PE | 1..242 | 1..242 | 1333 | 100 | Plus |
| Csp-PD | 244 | CG6395-PD | 1..242 | 1..242 | 1333 | 100 | Plus |
| Csp-PC | 228 | CG6395-PC | 1..228 | 1..249 | 1218 | 91.6 | Plus |
