BO23978.complete Sequence
3037 bp assembled on 2010-05-12
GenBank Submission: KX797273
> BO23978.complete
GAAGTTATCAGTCGACATGTCTTCGTTCTTCGATTGCTTCAATGATTTTC
TGCAGAGCGGCGGCAACTTAGTGCAGAATGTGTCCCAGGAGCAGGAACAG
AAAATCGCGGACCAGGAACTGGACGGCGTCATAGAGCTAATGCCGCCAAC
CACCCCCACGCCCAGCGAGAGTTCCAGTACCATTTCGGCCCCTAGTGAAT
CCTCCTTTAGCGAGAAAATGGAGCACAGCTATATGCGAGATACGCCAGTG
CGCAGCGATGTTCACAACGGCCTAACGCCCGCTAGGAACATTCTGGTCCG
CCATCCGCCACAGTGTCCCAGTTGCCACACATATCCGCCGCAGCACGAGG
AGCTGTCAGAGATTCAGCAGGCCCATGTGCCGCCCTATGATGAGGTAGTC
GCCAAGGAGGCAATGAATGAATGCGCTCGTATTGCAAAATACGTAAAGAA
CAACAATTCGGATGAGCAAGATTGGGTGGCGCGCGTTAATAAATTTAATT
GGACGCCCATGCAGGAGATGGTTTTCGAGAAGGTCTGCTCAATTCTGGAC
CAGGATCAGTTGGCACGCTTGGCCAACGACAAACGTCAGCACGAGCCTAT
CCATCGTCGCATAAGCTCGGACAAATCCGCGTCCAGGTTTCGCAAACTTC
TAGCCAGCGTGGCTTGGGAGTCACGCATTACGCAGTGGATCCATGCTCTG
CTCATGGAGCACTTGTCGCCTTCGTATATGGCCTCTTATCTGGAAATTCT
TCAGACTCTGAAGACCAAGTTGCCCACTTTAGTGGACAAGATGCTGTTTG
GTAGGCCCTTAAATAATAGTCAGGAACTGCTGGCACCGGTGATGAAAAAA
CGATGGGAACCAAATATCATGCCCAAGTCCCGTCAGCTAACGCATAACGC
CATCATGGTGGTGCTGCCCAACATGCCGACAACTGGAACAGTTTCGGACC
GCATGCAGAAGTGGTACCAGGCATTATCTACTATCACTCAGGTGGTTCAG
ATTTCGCTGCCGAATACAAACAACAGAATTGGGAATCAGAATCTGGACCA
TGTGGCCGAAACCATTGTGTCTATCACACGCGTCAAAATCAACGAATTGC
GCACAGAAAACCCCAGTCGTGGCATCATACTCGTTGGATTTAATGCTGGA
GCTGCCTTGGCTCTACAGGTTGCTCTATCGGAGAGCGTTGCCTGTGTGGT
TTGCATGGGATTTGCTTACAACACAATACGTGGGCCACGCGGAACCCCCG
ATGACCGCATGTTGGACATAAAAGCGCCGATACTCTTTGTCATCGGACAA
AATTCCGCACGCACAAGTCAGGAGGAAATGGAAGGGTTACGCGAACGAAT
GCAGTCCGAATCTTCGTTGGTCGTAGTGGGTAGTGCAGATGATGCACTGC
GTGTGCCTAAGAGCAAGCGGCGAATAGAAGGCGTTACACAGTCGATGGTT
GATTACATGGTTGTCGAGGAAATCTTTGAGTTTGTGAACAGAACGCTAAG
CAATCCACCTGGACCGCGTATGCCCACATGTTTAATGCATCAGCAGGGCT
ACCAGCGACTGCCAAAGCAGTCACCTCACATCCTGGCCGATGGAAACGCA
AACAAGGCTGTTCAGCAGATGCGTAAGCGAAAGATGGACGGTGGTTTAGA
CGACTCAATGGGTCAGCCTTCCAAAACAAAGTTTGTTCCTCACAATGATG
CCCAGGACTATGGAGATGCCCAAACCACTGCAGGTGGTTCAGCGAGCCTG
CCAAAGGTGATAACTCCCGGTGTTTTGGGAAAACAACTGCCGCCCGTCAA
TCTCGCAGCTGGCACCAAGATTAAGATGATCCCATCCAGCCAGTTCGTTC
AAATCAAATCGCTACCGTCACAGAGCAAACTCATTAACTACACGCTAAAC
AAACCGAGTGTCGGGACAAGCAGCACCGCCAACATTGGCAGCGTGGTGAA
GACCCTACCATGCTCATCCGTTAGTGGCCAGCAGATCATCACCTTAAAAA
CGCCCTCGGGACAAACGCAGCAGTTTGCAACAGCAGCCACATCAACAGGT
GCCGCTGGTTCATCGACATCAACAGGAACGGGACAGAAAAAGTACACAGT
TTTTAAGAACGCCAACGGCATGACCATGCTGCATCTCACCAAGAGCGTAC
CCACTACAGGTTCTAGCAGCGGCTCTGCGAATATGGATTTGTCCAACATT
ATCGATATGCCCATTGTTTTTGCCGATAACGAAGGCAATATTCCCGAGCA
CCAACAGGCGGATAAGGATATTAAACCAGCCCCCATTCGAAGTGCGAATA
AGAGCCCGTTGATCATCAGTCAGAAAATCATTAAGGAGGCAAATAAGCCC
TCGGGCATGGTTACCAGTGGCAGCATTACTGCCGTCAGCAAGCCGGGGAA
TATTGTGCTTAACAAAGGCCTTCAGCAATTGCTAAATTCATCGCCCGGTG
GAACACTTGCCACTCAGAATAAAGTTGTGTACCTCAACCGGAGTACAATT
AAGCCAATGGGAAATGTGGCGCCTGGTACTCATCGTGTCCCTATAAGGAT
TGTGAGCACCCCAAACACCGGAGGTGCAGTGACGACCACAGCTTCCAGTA
GTCCCATTATGGTTGATCCAGCCACAGGATCCAAGGTTGCCAAGACCGTC
AATGTGCAGACAATCAAGCCTACTGGTTCCGTTCTGGCTCAAGGCACCAT
CCGTCAAGCGGGCAACGTGGGCACCAAGAGCTACCTCCAGATGATCAATA
CCGCACCTGGTGCATCCAAAACTGTTGCTGGCGACGGCAAAGGTTCTGTA
CGAAATATCTACTTTAAATCGGCAACCGGACTCAAGCAGTTGCCAGTGCA
GATGCTAGGCAATCGAATACCGGGTGGCGCCGTCATTTCGTCAACCGCAT
CGGCATCTTCTGGATCTCCTGGCTTGCGGCGAGTGGTAAACATTGGGCCC
GTTTCCAAGGTGACGGCCACGTCGACAACATCATCGTCGATAGCTGCTAC
TTTAACCCATAATAAAATGGCAAGCTTTCTAGACCAT
BO23978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd1-RA | 3006 | CG8233-PA | 1..3003 | 17..3019 | 15015 | 100 | Plus |
| Rcd1-RB | 3201 | CG8233-PB | 336..3198 | 157..3019 | 14270 | 99.9 | Plus |
| Rcd1-RC | 2805 | CG8233-PC | 1..2802 | 218..3019 | 14010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd1-RA | 3302 | CG8233-RA | 123..3125 | 17..3019 | 15015 | 100 | Plus |
| Rcd1-RB | 3669 | CG8233-RB | 630..3492 | 157..3019 | 14270 | 99.9 | Plus |
| Rcd1-RC | 3139 | CG8233-RC | 116..2962 | 173..3019 | 14235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14148440..14149182 | 3019..2277 | 3715 | 100 | Minus |
| 2R | 25286936 | 2R | 14149234..14149818 | 2279..1695 | 2925 | 100 | Minus |
| 2R | 25286936 | 2R | 14151020..14151546 | 1019..493 | 2635 | 100 | Minus |
| 2R | 25286936 | 2R | 14150516..14150962 | 1466..1020 | 2235 | 100 | Minus |
| 2R | 25286936 | 2R | 14151607..14151926 | 492..173 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 14150226..14150454 | 1694..1466 | 1145 | 100 | Minus |
| 2R | 25286936 | 2R | 14152846..14153001 | 172..17 | 780 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2505 | 2017..2173 | 149 | 60.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1190 | 2018..2105 | 124 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2371 | 2027..2094 | 119 | 66.2 | Plus |
BO23978.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:51 Download gff for
BO23978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8233-RA | 119..3121 | 17..3021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:02 Download gff for
BO23978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RA | 123..3125 | 17..3021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:05 Download gff for
BO23978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RA | 123..3125 | 17..3021 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:05 Download gff for
BO23978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14148438..14149179 | 2280..3021 | 99 | <- | Minus |
| 2R | 14149234..14149818 | 1695..2279 | 100 | <- | Minus |
| 2R | 14150226..14150454 | 1466..1694 | 100 | <- | Minus |
| 2R | 14150517..14150962 | 1020..1465 | 100 | <- | Minus |
| 2R | 14151020..14151546 | 493..1019 | 100 | <- | Minus |
| 2R | 14151607..14151926 | 173..492 | 100 | <- | Minus |
| 2R | 14152846..14153001 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:02 Download gff for
BO23978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10035943..10036684 | 2280..3021 | 99 | <- | Minus |
| arm_2R | 10036739..10037323 | 1695..2279 | 100 | <- | Minus |
| arm_2R | 10037731..10037959 | 1466..1694 | 100 | <- | Minus |
| arm_2R | 10038022..10038467 | 1020..1465 | 100 | <- | Minus |
| arm_2R | 10038525..10039051 | 493..1019 | 100 | <- | Minus |
| arm_2R | 10039112..10039431 | 173..492 | 100 | <- | Minus |
| arm_2R | 10040351..10040506 | 17..172 | 100 | | Minus |
BO23978.pep Sequence
Translation from 16 to 3037
> BO23978.pep
MSSFFDCFNDFLQSGGNLVQNVSQEQEQKIADQELDGVIELMPPTTPTPS
ESSSTISAPSESSFSEKMEHSYMRDTPVRSDVHNGLTPARNILVRHPPQC
PSCHTYPPQHEELSEIQQAHVPPYDEVVAKEAMNECARIAKYVKNNNSDE
QDWVARVNKFNWTPMQEMVFEKVCSILDQDQLARLANDKRQHEPIHRRIS
SDKSASRFRKLLASVAWESRITQWIHALLMEHLSPSYMASYLEILQTLKT
KLPTLVDKMLFGRPLNNSQELLAPVMKKRWEPNIMPKSRQLTHNAIMVVL
PNMPTTGTVSDRMQKWYQALSTITQVVQISLPNTNNRIGNQNLDHVAETI
VSITRVKINELRTENPSRGIILVGFNAGAALALQVALSESVACVVCMGFA
YNTIRGPRGTPDDRMLDIKAPILFVIGQNSARTSQEEMEGLRERMQSESS
LVVVGSADDALRVPKSKRRIEGVTQSMVDYMVVEEIFEFVNRTLSNPPGP
RMPTCLMHQQGYQRLPKQSPHILADGNANKAVQQMRKRKMDGGLDDSMGQ
PSKTKFVPHNDAQDYGDAQTTAGGSASLPKVITPGVLGKQLPPVNLAAGT
KIKMIPSSQFVQIKSLPSQSKLINYTLNKPSVGTSSTANIGSVVKTLPCS
SVSGQQIITLKTPSGQTQQFATAATSTGAAGSSTSTGTGQKKYTVFKNAN
GMTMLHLTKSVPTTGSSSGSANMDLSNIIDMPIVFADNEGNIPEHQQADK
DIKPAPIRSANKSPLIISQKIIKEANKPSGMVTSGSITAVSKPGNIVLNK
GLQQLLNSSPGGTLATQNKVVYLNRSTIKPMGNVAPGTHRVPIRIVSTPN
TGGAVTTTASSSPIMVDPATGSKVAKTVNVQTIKPTGSVLAQGTIRQAGN
VGTKSYLQMINTAPGASKTVAGDGKGSVRNIYFKSATGLKQLPVQMLGNR
IPGGAVISSTASASSGSPGLRRVVNIGPVSKVTATSTTSSSIAATLTHNK
MASFLDH
BO23978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd1-PA | 1001 | CG8233-PA | 1..1001 | 1..1001 | 5099 | 100 | Plus |
| Rcd1-PF | 1046 | CG8233-PF | 1..1046 | 1..1001 | 5038 | 95.6 | Plus |
| Rcd1-PB | 1066 | CG8233-PB | 109..1066 | 45..1001 | 4852 | 99.7 | Plus |
| Rcd1-PH | 1108 | CG8233-PH | 109..1108 | 45..1001 | 4799 | 95.5 | Plus |
| Rcd1-PG | 1111 | CG8233-PG | 109..1111 | 45..1001 | 4791 | 95.1 | Plus |
