BO23979.complete Sequence
1468 bp assembled on 2010-04-15
GenBank Submission: KX796987
> BO23979.complete
GAAGTTATCAGTCGACATGGCCAGTGGCAACAATGAAACTGAGCCGCTCT
ACTGCGGCAGCGGCATGGATAATTTTCATACAAGCTACAAGAACATGCAT
GGCTATGTTTCGCTGGTGGTCTGCATCCTGGGCACCATCGCGAATACCTT
GAATATCATTGTGCTAACCCGACGGGAGATGCGCTCCCCCACGAATGCCA
TACTCACGGGTCTGGCCGTGGCCGACCTGGCAGTTATGCTGGAGTATATA
CCCTACACCATACACGACTACATCCTGACGGACAGTTTGCCGCGGGAGGA
GAAGCTCAGCTACAGCTGGGCCTGCTTCATCAAGTTCCATTCGATTTTCG
CCCAGGTTCTGCACACCATTTCCATTTGGCTGACGGTGACCCTGGCTGTT
TGGCGTTATATAGCGGTGGGTTATCCGCAAAAGAATCGCGTATGGTGCGG
TATGAGAACCACCATAATAACGATAACCACCGCTTATGTGGTGTGTGTTC
TGGTGGTGTCGCCGTCGCTCTATTTGATCACGGCTATAACCGAATATGTC
GATCAGTTGGATATGAATGGCAAAGTGATAAACTCCATTCCCATGACCCA
GTACGTAATCGATTATCGTAATGAGTTACTGAGTGCCAGGACGGCTGCCC
TGAATGCCACGCCCACCAGTGCACCACTGAACGAAACTGTGTGGTTAAAT
GCGAGCACCTTGCTGACATCGACAACCACCGCTGCACCACCCACGCCATC
GCCAGTGGTGCGAAATGTTACTGTCTATAGGCTATACCACAGCGATTTGG
CGTTGCACAATGCCTCGCTGCAAAATGCCACATTTCTCATATACAGTGTA
GTGATTAAGCTGATACCATGCATAGCACTCACCATTCTGTCGGTTCGATT
GATCCTGGCCTTACTGGAGGCCAAGCGGCGGCGGAAGAAGCTCACCAGCA
AGCCCGCCACTCCGGGTGCCAGTAATGGAACCAAATCACCGGCCAATGGT
AAAGCAGCGGATAGGCCCCGGAAAAATAGCAAAACTCTGGAAAAGGAAAA
GCAGACGGATCGCACCACGAGAATGCTGCTGGCGGTGCTACTCCTCTTTC
TCATCACTGAATTTCCACAAGGGATTATGGGTCTGCTGAATGCTGTGCTC
GGAGATGTCTTCTATCTGCAGTGCTACCTAAGACTGAGTGACCTGATGGA
TATCTTGGCCCTGATCAACTCCAGCATCAACTTCATTTTGTACTGCTCCA
TGAGCAAGCAATTCCGCACCACGTTCACGCTGCTCTTTCGTCCAAAATTC
CTGGACAAGTGGCTGCCGGTGGCGCAGGACGAAATGGCAGCTGCTCGAGC
TGAACGCTCTGCGGTGGCACCGGTCCTGGAAAAGGGACGACAGCAGCCGC
AGGTGGTGATGGCCAGCACGACCACCAACATCACGCAGGTGACAAATCTG
GCAAGCTTTCTAGACCAT
BO23979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MsR1-RB | 1671 | CG8985-PB | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| MsR1-RA | 1437 | CG8985-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| MsR2-RC | 1944 | CG43745-PC | 20..488 | 42..510 | 1070 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MsR1-RB | 3544 | CG8985-RB | 426..1859 | 17..1450 | 7170 | 100 | Plus |
| MsR1-RA | 3544 | CG8985-RA | 426..1859 | 17..1450 | 7170 | 100 | Plus |
| MsR2-RC | 2918 | CG43745-RC | 573..1041 | 42..510 | 1070 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2342646..2343752 | 83..1189 | 5535 | 100 | Plus |
| 3L | 28110227 | 3L | 2343852..2344114 | 1188..1450 | 1315 | 100 | Plus |
| 3L | 28110227 | 3L | 2298178..2298578 | 110..510 | 1000 | 83.3 | Plus |
| 3L | 28110227 | 3L | 2299123..2299275 | 1037..1189 | 360 | 82.4 | Plus |
| 3L | 28110227 | 3L | 2338922..2338989 | 17..84 | 340 | 100 | Plus |
| 3L | 28110227 | 3L | 2299763..2299907 | 1188..1332 | 275 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:46:43 has no hits.
BO23979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:11 Download gff for
BO23979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DmsR-1-RA | 426..1859 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:55 Download gff for
BO23979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR1-RA | 426..1859 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:32 Download gff for
BO23979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR1-RA | 426..1859 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:32 Download gff for
BO23979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2338922..2338989 | 17..84 | 100 | -> | Plus |
| 3L | 2342648..2343750 | 85..1187 | 100 | -> | Plus |
| 3L | 2343852..2344114 | 1188..1452 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:55 Download gff for
BO23979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2338922..2338989 | 17..84 | 100 | -> | Plus |
| arm_3L | 2342648..2343750 | 85..1187 | 100 | -> | Plus |
| arm_3L | 2343852..2344114 | 1188..1452 | 99 | | Plus |
BO23979.pep Sequence
Translation from 16 to 1468
> BO23979.pep
MASGNNETEPLYCGSGMDNFHTSYKNMHGYVSLVVCILGTIANTLNIIVL
TRREMRSPTNAILTGLAVADLAVMLEYIPYTIHDYILTDSLPREEKLSYS
WACFIKFHSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRVWCGMRTTI
ITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIPMTQYVIDY
RNELLSARTAALNATPTSAPLNETVWLNASTLLTSTTTAAPPTPSPVVRN
VTVYRLYHSDLALHNASLQNATFLIYSVVIKLIPCIALTILSVRLILALL
EAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTDRT
TRMLLAVLLLFLITEFPQGIMGLLNAVLGDVFYLQCYLRLSDLMDILALI
NSSINFILYCSMSKQFRTTFTLLFRPKFLDKWLPVAQDEMAAARAERSAV
APVLEKGRQQPQVVMASTTTNITQVTNLASFLDH
BO23979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MsR1-PB | 556 | CG8985-PB | 1..478 | 1..478 | 2427 | 100 | Plus |
| MsR1-PA | 478 | CG8985-PA | 1..478 | 1..478 | 2427 | 100 | Plus |
| MsR2-PB | 488 | CG43745-PB | 4..443 | 6..439 | 1523 | 68.8 | Plus |
| MsR2-PA | 488 | CG43745-PA | 4..443 | 6..439 | 1523 | 68.8 | Plus |
| MsR2-PC | 647 | CG43745-PC | 4..443 | 6..439 | 1523 | 68.8 | Plus |
