BO24061.complete Sequence
880 bp assembled on 2010-04-15
GenBank Submission: KX794516
> BO24061.complete
GAAGTTATCAGTCGACATGTCGCTAGATTATGAGAAGATGAGCTGGTCGG
ATGTACGGGATCAGTTCAGAACGTGGCGCGAGGAGACGGGTCGCCACAGC
GAGGAGGTGGTCCAGCTGTGGGTTGCTGTGCTAGAGGACAAGGTGCACAA
GACCGGCAACGAGCGGCATCTCATCCTGGAGCAGGTGATCATCGCGGCAT
TGGATACGGCTCGCTTTGACATCGCCACCAAGTGTACCAAGCAGCTGTCC
CTCGAGTTCCCGGGCAGCCTGCGCGTGATGAAGTTCAAAGCGATGCGCTA
CGAGGCCCTGGAGCAGTACGATGAGGCCGACGAGGTCCTGGATGCAATCA
TTGCTAAGGACGAGACAAATGCCGCGCCCAGGAAGCGCAAGATTGCCATC
CTTAAGGCCCGTGGTCGTCGCCTGGAGGCCATCAAGGAGCTCAACGAGTA
TCTGAAGAAGTTTATGTCTGACCAGGAGGCATGGCATGAGCTGTGCAACA
TGTATCTGGCTGAAGGCGAGTTTGGCAAAGCTGCCTTCTGCATGGAGGAG
GTTTTGCTGCACAATCCGCATAGCCATCTAATACACCAGCGTTTGGCAGA
AATACGATACACAATGGGTGGCGTCGAGAATATGGAATCGGCTCGCACTT
ACTATTCGCAGGCCCTGAAGCTTAATCCGCATAACTTGAGGGCCCTTTAT
GGCATTTACTTGTGCTGCAACCATTTGGACAACTCTCGAGCCGTGAGCTC
CAAACGGAAGGAGCTGCAAAAGTTGAGTCAGTGGGCCCTCGAACAACTTT
TGACTAAACAAACGATTGTACCCTTGGAGGCTGCTTTTGGAAACCTGGAA
ATCAAATCGAATGCAAGCTTTCTAGACCAT
BO24061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3678-RB | 849 | CG3678-PB | 1..846 | 17..862 | 4170 | 99.5 | Plus |
| CG3678-RA | 849 | CG3678-PA | 1..846 | 17..862 | 4170 | 99.5 | Plus |
| CG17556-RB | 849 | CG17556-PB | 1..846 | 17..862 | 4155 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3678-RB | 1216 | CG3678-RB | 112..957 | 17..862 | 4170 | 99.5 | Plus |
| CG3678-RA | 1088 | CG3678-RA | 112..957 | 17..862 | 4170 | 99.5 | Plus |
| CG17556-RB | 1089 | CG17556-RB | 113..958 | 17..862 | 4155 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16995403..16995814 | 461..50 | 2060 | 100 | Minus |
| 3R | 32079331 | 3R | 16991182..16991593 | 461..50 | 2000 | 99 | Minus |
| 3R | 32079331 | 3R | 16990593..16990839 | 862..616 | 1235 | 100 | Minus |
| 3R | 32079331 | 3R | 16994814..16995060 | 862..616 | 1160 | 98 | Minus |
| 3R | 32079331 | 3R | 16990900..16991057 | 617..460 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 16995121..16995278 | 617..460 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:54:46 has no hits.
BO24061.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:47 Download gff for
BO24061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3678-RA | 101..946 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:34 Download gff for
BO24061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3678-RA | 112..957 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:32 Download gff for
BO24061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3678-RA | 112..957 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:32 Download gff for
BO24061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16991734..16991767 | 17..50 | 100 | | Minus |
| 3R | 16990589..16990838 | 617..864 | 99 | <- | Minus |
| 3R | 16990901..16991057 | 460..616 | 100 | <- | Minus |
| 3R | 16991184..16991592 | 51..459 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:34 Download gff for
BO24061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12816311..12816560 | 617..864 | 99 | <- | Minus |
| arm_3R | 12816623..12816779 | 460..616 | 100 | <- | Minus |
| arm_3R | 12816906..12817314 | 51..459 | 99 | <- | Minus |
| arm_3R | 12817456..12817489 | 17..50 | 100 | | Minus |
BO24061.pep Sequence
Translation from 16 to 880
> BO24061.pep
MSLDYEKMSWSDVRDQFRTWREETGRHSEEVVQLWVAVLEDKVHKTGNER
HLILEQVIIAALDTARFDIATKCTKQLSLEFPGSLRVMKFKAMRYEALEQ
YDEADEVLDAIIAKDETNAAPRKRKIAILKARGRRLEAIKELNEYLKKFM
SDQEAWHELCNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHQRLAEIRYTM
GGVENMESARTYYSQALKLNPHNLRALYGIYLCCNHLDNSRAVSSKRKEL
QKLSQWALEQLLTKQTIVPLEAAFGNLEIKSNASFLDH
BO24061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17556-PB | 282 | CG17556-PB | 1..282 | 1..282 | 1459 | 100 | Plus |
| CG17556-PA | 282 | CG17556-PA | 1..282 | 1..282 | 1459 | 100 | Plus |
| CG3678-PB | 282 | CG3678-PB | 1..282 | 1..282 | 1456 | 99.6 | Plus |
| CG3678-PA | 282 | CG3678-PA | 1..282 | 1..282 | 1456 | 99.6 | Plus |
