BO24068.complete Sequence
1015 bp assembled on 2010-04-15
GenBank Submission: KX793819
> BO24068.complete
GAAGTTATCAGTCGACATGGACTCCGACGCCGCACAAAAGACCTGGGAGC
TGGAGAACAACATCCAGACGTTGCCCAGTTGTGACGAGATCTTTCGCTAC
GACGCCGAACAGCAGCGGCAGATCATCGATGCGAAGCCCTGGGAGAAAGA
TCCCCACTTCTTTAAGGACATTAAGATCTCGGCTCTGGCGCTCCTAAAGA
TGGTGATGCACGCTCGCTCTGGCGGTACTTTGGAGGTGATGGGTCTAATG
CTTGGCAAGGTAGAGGACAACACAATGATTGTCATGGATGCATTTGCACT
GCCAGTGGAGGGCACTGAAACCCGCGTCAATGCCCAGGCACAAGCGTACG
AGTACATGACCGCCTACATGGAAGCGGCCAAAGAGGTGGGACGCATGGAA
CACGCCGTGGGCTGGTATCACAGCCATCCCGGTTACGGTTGCTGGTTGTC
CGGCATCGATGTGTCCACCCAGATGCTCAACCAGACATACCAGGAGCCAT
TCGTGGCCATTGTGGTTGATCCGGTGCGCACTGTTTCCGCTGGCAAGGTG
TGTCTGGGTGCATTCCGCACGTATCCAAAAGGTTATAAGCCACCAAACGA
GGAGCCCTCGGAGTATCAGACCATCCCGCTGAATAAGATCGAAGACTTTG
GAGTCCACTGCAAGCAGTACTATCCCTTGGAAATTAGCTACTTCAAGTCT
GCTCTGGACCGCAGGCTCCTCGACTCTCTGTGGAACAAATACTGGGTAAA
CACACTGGGCAGCTCGGGTCTGCTCACCAACACAGAGTACACCACCGGTC
AGATCATGGATCTCTCCGAGAAGCTGGAGCAGAGTGAGAACTTTTTAGGT
CGCGGAACCGATGTCAATGAGAAGCGTTCGGAGGATAAGCTGTCCAAGGC
CACCCGAGACTGCAGCCGCTCCACCATTGAACTGATACACGGCTTGATGG
CTCAGATTGTTAAGGACAAACTTTTCAACAAGGTCGGACTGGGCAAAGCA
AGCTTTCTAGACCAT
BO24068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN5-RA | 984 | CG14884-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
| CSN5-RB | 978 | CG14884-PB | 1..975 | 17..997 | 4780 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN5-RA | 1196 | CG14884-RA | 81..1061 | 17..997 | 4905 | 100 | Plus |
| CSN5-RB | 1190 | CG14884-RB | 81..1055 | 17..997 | 4780 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16470492..16471070 | 277..855 | 2895 | 100 | Plus |
| 3R | 32079331 | 3R | 16470179..16470439 | 17..277 | 1305 | 100 | Plus |
| 3R | 32079331 | 3R | 16471128..16471271 | 854..997 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:43:25 has no hits.
BO24068.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:13 Download gff for
BO24068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 79..1059 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:18 Download gff for
BO24068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 81..1061 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:53 Download gff for
BO24068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 81..1061 | 17..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:53 Download gff for
BO24068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16470179..16470439 | 17..277 | 100 | -> | Plus |
| 3R | 16470493..16471069 | 278..854 | 100 | -> | Plus |
| 3R | 16471129..16471271 | 855..999 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:18 Download gff for
BO24068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12295901..12296161 | 17..277 | 100 | -> | Plus |
| arm_3R | 12296215..12296791 | 278..854 | 100 | -> | Plus |
| arm_3R | 12296851..12296993 | 855..999 | 98 | | Plus |
BO24068.pep Sequence
Translation from 16 to 1015
> BO24068.pep
MDSDAAQKTWELENNIQTLPSCDEIFRYDAEQQRQIIDAKPWEKDPHFFK
DIKISALALLKMVMHARSGGTLEVMGLMLGKVEDNTMIVMDAFALPVEGT
ETRVNAQAQAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVS
TQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYPKGYKPPNEEPSEY
QTIPLNKIEDFGVHCKQYYPLEISYFKSALDRRLLDSLWNKYWVNTLGSS
GLLTNTEYTTGQIMDLSEKLEQSENFLGRGTDVNEKRSEDKLSKATRDCS
RSTIELIHGLMAQIVKDKLFNKVGLGKASFLDH
BO24068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN5-PA | 327 | CG14884-PA | 1..327 | 1..327 | 1725 | 100 | Plus |
| CSN5-PB | 325 | CG14884-PB | 1..325 | 1..327 | 1701 | 99.4 | Plus |
| Rpn11-PA | 308 | CG18174-PA | 27..256 | 50..273 | 376 | 38 | Plus |
