BO24108.complete Sequence
439 bp assembled on 2010-05-05
GenBank Submission: KX796024
> BO24108.complete
GAAGTTATCAGTCGACATGGCATCAGGTTTGCAGCGGGTTAACGAAAATG
AGATGAAGGCAATGGATGCCAATAGGTATGCCACCAAGAAGACGATCGCC
CAGGGCATGCTGGACATCGCCCTGCTGACCGCCAATGCCTCGCAGCTGAA
GTACATCCTCCAGGTGGGCGAACAGCACCAGTTCTACAAGCTGATGCTGA
TCCTGATCAGTCTGTCCATAGTCATGCAGGTGGCTGCTGGACTCTTGCTG
GTCATTCAGTCCCTCATCAATATGCATAATACCAAGGATCGAAATCGGGG
CTTCGCCATCAACCACTTCATAGATGCCTTCATATTCCTGTCCGTGTTTT
GTGACATCATGAAGATGAATTTTGGACTGGATCCGGCGGTTCCTCACACA
GATGTGGAACTTCTGAAGCCCGCAAGCTTTCTAGACCAT
BO24108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijC-RB | 408 | CG14394-PB | 1..405 | 17..421 | 2025 | 100 | Plus |
| NijC-RG | 393 | CG14394-PG | 22..390 | 53..421 | 1845 | 100 | Plus |
| NijC-RC | 411 | CG14394-PC | 1..215 | 17..231 | 1075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijC-RB | 770 | CG14394-RB | 243..647 | 17..421 | 2025 | 100 | Plus |
| NijC-RG | 542 | CG14394-RG | 51..419 | 53..421 | 1845 | 100 | Plus |
| NijC-RC | 969 | CG14394-RC | 243..457 | 17..231 | 1075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12697062..12697256 | 227..421 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 12696121..12696302 | 51..232 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 12695371..12695406 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:26:26 has no hits.
BO24108.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:41 Download gff for
BO24108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14394-RB | 226..630 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:26 Download gff for
BO24108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijC-RB | 243..647 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:22 Download gff for
BO24108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijC-RB | 243..647 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:22 Download gff for
BO24108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12695371..12695406 | 17..52 | 100 | -> | Plus |
| 3R | 12696123..12696299 | 53..229 | 100 | -> | Plus |
| 3R | 12697065..12697256 | 230..423 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:26 Download gff for
BO24108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8521093..8521128 | 17..52 | 100 | -> | Plus |
| arm_3R | 8521845..8522021 | 53..229 | 100 | -> | Plus |
| arm_3R | 8522787..8522978 | 230..423 | 98 | | Plus |
BO24108.pep Sequence
Translation from 16 to 439
> BO24108.pep
MASGLQRVNENEMKAMDANRYATKKTIAQGMLDIALLTANASQLKYILQV
GEQHQFYKLMLILISLSIVMQVAAGLLLVIQSLINMHNTKDRNRGFAINH
FIDAFIFLSVFCDIMKMNFGLDPAVPHTDVELLKPASFLDH
BO24108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijC-PB | 135 | CG14394-PB | 1..135 | 1..135 | 675 | 100 | Plus |
| NijC-PG | 130 | CG14394-PG | 8..130 | 13..135 | 616 | 100 | Plus |
| NijC-PD | 138 | CG14394-PD | 1..122 | 1..122 | 398 | 66.4 | Plus |
| NijC-PC | 136 | CG14394-PC | 1..117 | 1..114 | 378 | 70.1 | Plus |
| NijC-PF | 133 | CG14394-PF | 8..117 | 13..122 | 339 | 62.7 | Plus |
