BO24109.complete Sequence
1300 bp assembled on 2010-05-05
GenBank Submission: KX798217
> BO24109.complete
GAAGTTATCAGTCGACATGAAGTTAACAACCTGTCAAATTGCTAAAGTAT
TTCCGCTGTTGACAGCCTTCTTCTTCCTCAATTCTCCCAGCGCAGCCTCA
TTATCCTTCGGTTTGAGTCCCACCTTCGCCTCCGCCTCCGCCTCCAGCTC
CTTGTCCTCGTCATCGTCCTCGTCCTCCCACTTTCACTCAGAAAAACCCC
TCCACTCGGATGTACTCGTCCTGCGAGCGGCCAAGCCATCCAGGGCCATT
GCAACAAGCGCAGATGCGGCTACGCGGTCTGTGCCAGCGTCAGCGGCAGA
AACAACACTTGGCAGCAAGTCAATTTGGCCGACAGCTATACAAACAAAAA
GTCCACGTAATGCGCGTGAAGCTGGACGTCACAAACGTCAAATGCAAAAG
CCCGCAATCCAGCAGCAACCACTGCAGCAGCAGCAACAGCGCATTAATCC
CCCGCAGCAAAAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAAGTGCAAC
ATCAGGCTCAACGAGTGGGCGTTTTAATACCTCCTTCGCTGCACGTTGAT
TTGACGCATGTGCAACAGGGCTTTCAGAATTTCCTTGACTTTTTCCAACT
GCATTTATTTAATGTCACCGTCGATTTTCTGCGTGATGTGGACTTAAGCG
GCTTCATTAAATTACTCGAGCTGCCCAAGTACACGAGCGTTATAAAGACT
TTAAATGCGGGCATTATGGTAGCCAGCCACGTGGACGTGGACCAAAATTC
CACTATCTACATTGGCACGCCCAGCCAGCCACGTCAGCAACATCGGCTGC
ATTCAAAGCAGGAGCAGGAGCCCCATCGTCATCATCATGAGGACTCCAAA
GCAAAACAGTTTCCAGCGGGCGAGGAGGAATCCCATTCATCGGGCGAGAC
CGAGGAAAATCATTGGAACGACGCCCGCATCTTCTCGGGTCACTGTCATC
AGCTGGCGGAGCAACTGGCCCTCGATTTCAATAAGACCGTCGTCCTGTGG
CCCTGTCCGCGAATGAAAATCTCCAGCAATTTTCTTCCGTCATTCGAAGC
AATTTCCCTAGCGGTACAAAGCATTTCCACCAAGTTGAACTGGTCGCAAG
TTGATATCTATATTGGCGCTGCACACCGCTTCATCGGACTGCCAGAAATA
GAAAAGAACCATCTTGGGGATTTAGATCCCGGTCGAACCTATCTACTTGT
ATCTATGAGTGCCACCGCCACTCTCCTGGAATTCACAATCAGCTCTGTTG
CCTCTTGTTGTCAAAAAATTGCCGACCAGACAGCAAGCTTTCTAGACCAT
BO24109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34357-RB | 1269 | CG34357-PB | 1..1266 | 17..1282 | 6300 | 99.8 | Plus |
CG34357-RD | 5058 | CG34357-PD | 1..1102 | 17..1118 | 5480 | 99.8 | Plus |
CG34357-RC | 5058 | CG34357-PC | 1..1102 | 17..1118 | 5480 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34357-RB | 2287 | CG34357-RB | 698..1963 | 17..1282 | 6300 | 99.8 | Plus |
CG34357-RD | 7216 | CG34357-RD | 698..1799 | 17..1118 | 5480 | 99.8 | Plus |
CG34357-RC | 6633 | CG34357-RC | 698..1799 | 17..1118 | 5480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4537805..4538429 | 641..17 | 3095 | 99.7 | Minus |
3R | 32079331 | 3R | 4534149..4534526 | 1018..641 | 1890 | 100 | Minus |
3R | 32079331 | 3R | 4514956..4515120 | 1282..1118 | 825 | 100 | Minus |
3R | 32079331 | 3R | 4522988..4523087 | 1118..1019 | 500 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 574..599 | 177..152 | 112 | 92.3 | Minus |
BO24109.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:43 Download gff for
BO24109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34357-RB | 698..1963 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:31 Download gff for
BO24109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34357-RB | 698..1963 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:25 Download gff for
BO24109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34357-RB | 698..1963 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:25 Download gff for
BO24109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4522988..4523087 | 1019..1118 | 100 | <- | Minus |
3R | 4514952..4515119 | 1119..1284 | 98 | <- | Minus |
3R | 4534149..4534525 | 642..1018 | 100 | <- | Minus |
3R | 4537805..4538429 | 17..641 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:31 Download gff for
BO24109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 340674..340841 | 1119..1284 | 98 | <- | Minus |
arm_3R | 348710..348809 | 1019..1118 | 100 | <- | Minus |
arm_3R | 359871..360247 | 642..1018 | 100 | <- | Minus |
arm_3R | 363527..364151 | 17..641 | 99 | | Minus |
BO24109.pep Sequence
Translation from 16 to 1300
> BO24109.pep
MKLTTCQIAKVFPLLTAFFFLNSPSAASLSFGLSPTFASASASSSLSSSS
SSSSHFHSEKPLHSDVLVLRAAKPSRAIATSADAATRSVPASAAETTLGS
KSIWPTAIQTKSPRNAREAGRHKRQMQKPAIQQQPLQQQQQRINPPQQKR
QQQQQQQQQVQHQAQRVGVLIPPSLHVDLTHVQQGFQNFLDFFQLHLFNV
TVDFLRDVDLSGFIKLLELPKYTSVIKTLNAGIMVASHVDVDQNSTIYIG
TPSQPRQQHRLHSKQEQEPHRHHHEDSKAKQFPAGEEESHSSGETEENHW
NDARIFSGHCHQLAEQLALDFNKTVVLWPCPRMKISSNFLPSFEAISLAV
QSISTKLNWSQVDIYIGAAHRFIGLPEIEKNHLGDLDPGRTYLLVSMSAT
ATLLEFTISSVASCCQKIADQTASFLDH
BO24109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34357-PB | 422 | CG34357-PB | 1..422 | 1..422 | 2167 | 100 | Plus |
CG34357-PD | 1685 | CG34357-PD | 1..392 | 1..391 | 1891 | 95.2 | Plus |
CG34357-PC | 1685 | CG34357-PC | 1..392 | 1..391 | 1891 | 95.2 | Plus |