Clone BO24117 Report

Search the DGRC for BO24117

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:241
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG16739-RA
Protein status:BO24117.pep: Imported from assembly
Sequenced Size:538

Clone Sequence Records

BO24117.complete Sequence

538 bp assembled on 2010-05-05

GenBank Submission: KX794755

> BO24117.complete
GAAGTTATCAGTCGACATGAAGTTCTATCCGAATGCAGATGTCTGGTTCT
GTGTGGACAAGACCAGCTGCTTGAACAGCTATCAAAAGTATCCACCCACG
CACAGCTGGAAGATTCACGATCGGACCACCGCGCGGGAAATGTACTATTG
GCGCGACATCGAGGGCGTGAAGAAGACGGAGATCAAGCTTAAGGATCTGT
ACTTCACCAATTGGCCCAAAACCCGCATCCGTCCACAGGCCTGCTTGGGA
TTGCTCTATGCCACGGGCAACAGATTCATCCGACTGACCAAGGCACCACC
AGCGGGCTTCAAGTGTGCACCACTGCCCGTCAATCTGGCCACCGCTCGAA
TTGTCAAAGTGGAGCTGCGCAAGAAGGCGAAGCGCGAAAAACAGGCAGCT
AAAAAGGCTAAAAAGGAAGCGAAGAAGGCCAAGAAGGCGGGCAAAAAGGG
CAAAGGAAAGGGCGGTAATGGCGATCTTAAGCCAAAGGTCATTAGGACAT
ACGAAGACGCCGAGAAAGCAGCAAGCTTTCTAGACCAT

BO24117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG16739-RA 507 CG16739-PA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG16739-RA 695 CG16739-RA 114..618 16..520 2525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20342106..20342449 16..359 1720 100 Plus
2R 25286936 2R 20342510..20342672 358..520 815 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:24:03 has no hits.

BO24117.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:25 Download gff for BO24117.complete
Subject Subject Range Query Range Percent Splice Strand
CG16739-RA 80..583 17..522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:27 Download gff for BO24117.complete
Subject Subject Range Query Range Percent Splice Strand
CG16739-RA 115..618 17..522 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:28 Download gff for BO24117.complete
Subject Subject Range Query Range Percent Splice Strand
CG16739-RA 115..618 17..522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:28 Download gff for BO24117.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20342107..20342449 17..359 100 -> Plus
2R 20342512..20342672 360..522 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:27 Download gff for BO24117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16230017..16230177 360..522 98   Plus
arm_2R 16229612..16229954 17..359 100 -> Plus

BO24117.pep Sequence

Translation from 16 to 538

> BO24117.pep
MKFYPNADVWFCVDKTSCLNSYQKYPPTHSWKIHDRTTAREMYYWRDIEG
VKKTEIKLKDLYFTNWPKTRIRPQACLGLLYATGNRFIRLTKAPPAGFKC
APLPVNLATARIVKVELRKKAKREKQAAKKAKKEAKKAKKAGKKGKGKGG
NGDLKPKVIRTYEDAEKAASFLDH

BO24117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG16739-PA 168 CG16739-PA 1..168 1..168 904 100 Plus