BO24120.complete Sequence
667 bp assembled on 2010-05-05
GenBank Submission: KX798400
> BO24120.complete
GAAGTTATCAGTCGACATGCGATTCGCGCCAAGCTTGAGCCTCAAATCAA
CTAGAGGAGTTCATCAGTCGGATACGGAAGTGAGCAAGATCATGAGGTCC
TTGGATGTGATACCAGATGTAATACACATCGGACCGCAGGAGTTTCTTAA
TGTTACTTACCACGGGCATTTAGCAGCACATTGTGGAAAGGTACTGGAAC
CCATGCAAGTGCGTGATGAACCCTCCGTAAAGTGGCCCTCGGCACCGGAA
AACTACTACGCCCTGCTGATGGTGGATCCGGACGTACCCAATGCTATAAC
ACCCACGCACCGGGAGTTCCTACACTGGATGGTCCTCAACATACCCGGCA
ATCTGTTGGCCCTTGGGGACGTGCGCGTGGGATACATGGGTGCCACTCCG
CTGAAGGGGACCGGAACCCATCGGTTCGTCTTCCTGCTCTACAAACAGAG
GGACTACACCAAGTTTGACTTCCCGAAACTGCCGAAGCACTCGGTTAAGG
GTCGCAGTGGCTTTGAAACCAAGCGGTTCGCAAAGAAATACAGATTTGGC
CATCCGGTAGCTGGGAACTTCTTCACATCCCAATGGAGCCCCGATGTCCC
ATCCCTTATCAAAGCCATCTCGCACAATGCCCGTCAAGTAGCACACTTTG
CAAGCTTTCTAGACCAT
BO24120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17917-RA | 636 | CG17917-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17917-RA | 706 | CG17917-RA | 33..666 | 16..649 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6342336..6342833 | 152..649 | 2490 | 100 | Plus |
| 3R | 32079331 | 3R | 6342000..6342137 | 16..153 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:24:30 has no hits.
BO24120.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:28 Download gff for
BO24120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17917-RA | 1..633 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:40 Download gff for
BO24120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17917-RA | 34..666 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:39 Download gff for
BO24120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17917-RA | 34..666 | 17..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:39 Download gff for
BO24120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6342001..6342135 | 17..151 | 100 | -> | Plus |
| 3R | 6342336..6342833 | 152..651 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:40 Download gff for
BO24120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2167723..2167857 | 17..151 | 100 | -> | Plus |
| arm_3R | 2168058..2168555 | 152..651 | 99 | | Plus |
BO24120.pep Sequence
Translation from 16 to 667
> BO24120.pep
MRFAPSLSLKSTRGVHQSDTEVSKIMRSLDVIPDVIHIGPQEFLNVTYHG
HLAAHCGKVLEPMQVRDEPSVKWPSAPENYYALLMVDPDVPNAITPTHRE
FLHWMVLNIPGNLLALGDVRVGYMGATPLKGTGTHRFVFLLYKQRDYTKF
DFPKLPKHSVKGRSGFETKRFAKKYRFGHPVAGNFFTSQWSPDVPSLIKA
ISHNARQVAHFASFLDH
BO24120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17917-PA | 211 | CG17917-PA | 1..211 | 1..211 | 1134 | 100 | Plus |
| CG17919-PA | 202 | CG17919-PA | 20..202 | 22..204 | 417 | 44.3 | Plus |
| CG10298-PA | 187 | CG10298-PA | 13..184 | 31..202 | 413 | 44.8 | Plus |
| CG6180-PA | 257 | CG6180-PA | 75..255 | 21..201 | 401 | 44.2 | Plus |
| a5-PA | 210 | CG5430-PA | 22..205 | 18..201 | 377 | 36.4 | Plus |
