Clone BO24135 Report

Search the DGRC for BO24135

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:241
Well:35
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO24135.pep: Imported from assembly
Sequenced Size:691

Clone Sequence Records

BO24135.complete Sequence

691 bp assembled on 2010-05-05

> BO24135.complete
GAAGTTATCAGTCGACATGCACCAGGAGCAGATCAACGTCATCCGCAAGG
CCCTGCGCAAGTTACGCGGCATGCGGCTGGATCCAACCGTGACCCAGCAC
ACCACCCACCTGGTTAGCCTGGAGCCGCGACGTACCCTGAATCTCCTGCG
CGGATTGATGCGCGGAGTCTGGATAGTTAGCTACCAGTGGGTGTTGGCCT
CCATTCGGGCTGGCAAGTGGATCAATGAAGAGCCCTATGAGCTGACCAGG
TTTTCGCGTGCAATCGAGATTTGTCGTACAGAAAGGCAGGCCTTTGGCGT
CCACTACCAGTGTGAGTTGTTTCGCTTTATGGAGCCCTTCTATGTGTCCT
CCCTCTGCCGACCGGTGCAGTTCAACAATATGAAGGAGCTGCTCCTGCTG
GGCGGTGCCACCCTGACCGAGAACCGCTTCAAGGCCAAGTACATCATCGG
GGACAAGCGGCGCGCCGAGGACGATCGCGTCTATCTCGATCCTTACTGGG
TGCTGGACAGCATCACGAATATGCAAATTCAGCGCTTTGGCAAATATCTT
ATGAAGAGCGCCATTATCTCGGCCGATGGGATCCGGTACGAGGATCCTAG
GGATCGCGATGAGGACAAAACACAAAGAAGGCACCTTCACGACTTCGTCG
ATCCACCGTTTGTGCTGGACAAAGCAAGCTTTCTAGACCAT

BO24135.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
MCPH1-RD 3087 CG42572-PD 2426..3084 15..673 3295 100 Plus
MCPH1-RC 2946 CG42572-PC 2285..2943 15..673 3295 100 Plus
MCPH1-RB 2481 CG42572-PB 2426..2461 15..50 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
MCPH1-RD 3360 CG42572-RD 2571..3229 15..673 3295 100 Plus
MCPH1-RC 3149 CG42572-RC 2360..3018 15..673 3295 100 Plus
MCPH1-RB 2872 CG42572-RB 2571..2606 15..50 180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11896128..11896534 673..267 2035 100 Minus
2R 25286936 2R 11896596..11896816 268..48 1105 100 Minus
2R 25286936 2R 11897108..11897143 50..15 180 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:25:41 has no hits.

BO24135.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:36 Download gff for BO24135.complete
Subject Subject Range Query Range Percent Splice Strand
CG30038-RA 96..752 17..675 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:09 Download gff for BO24135.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RC 2362..3018 17..675 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:07 Download gff for BO24135.complete
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RC 2362..3018 17..675 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:07 Download gff for BO24135.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11896126..11896532 269..675 99 <- Minus
2R 11896596..11896814 50..268 100 <- Minus
2R 11897109..11897141 17..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:09 Download gff for BO24135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7783631..7784037 269..675 99 <- Minus
arm_2R 7784101..7784319 50..268 100 <- Minus
arm_2R 7784614..7784646 17..49 100   Minus

BO24135.pep Sequence

Translation from 16 to 691

> BO24135.pep
MHQEQINVIRKALRKLRGMRLDPTVTQHTTHLVSLEPRRTLNLLRGLMRG
VWIVSYQWVLASIRAGKWINEEPYELTRFSRAIEICRTERQAFGVHYQCE
LFRFMEPFYVSSLCRPVQFNNMKELLLLGGATLTENRFKAKYIIGDKRRA
EDDRVYLDPYWVLDSITNMQIQRFGKYLMKSAIISADGIRYEDPRDRDED
KTQRRHLHDFVDPPFVLDKASFLDH

BO24135.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
MCPH1-PC 981 CG42572-PC 763..981 1..219 1157 100 Plus
MCPH1-PD 1028 CG42572-PD 810..1028 1..219 1157 100 Plus