BO24135.complete Sequence
691 bp assembled on 2010-05-05
> BO24135.complete
GAAGTTATCAGTCGACATGCACCAGGAGCAGATCAACGTCATCCGCAAGG
CCCTGCGCAAGTTACGCGGCATGCGGCTGGATCCAACCGTGACCCAGCAC
ACCACCCACCTGGTTAGCCTGGAGCCGCGACGTACCCTGAATCTCCTGCG
CGGATTGATGCGCGGAGTCTGGATAGTTAGCTACCAGTGGGTGTTGGCCT
CCATTCGGGCTGGCAAGTGGATCAATGAAGAGCCCTATGAGCTGACCAGG
TTTTCGCGTGCAATCGAGATTTGTCGTACAGAAAGGCAGGCCTTTGGCGT
CCACTACCAGTGTGAGTTGTTTCGCTTTATGGAGCCCTTCTATGTGTCCT
CCCTCTGCCGACCGGTGCAGTTCAACAATATGAAGGAGCTGCTCCTGCTG
GGCGGTGCCACCCTGACCGAGAACCGCTTCAAGGCCAAGTACATCATCGG
GGACAAGCGGCGCGCCGAGGACGATCGCGTCTATCTCGATCCTTACTGGG
TGCTGGACAGCATCACGAATATGCAAATTCAGCGCTTTGGCAAATATCTT
ATGAAGAGCGCCATTATCTCGGCCGATGGGATCCGGTACGAGGATCCTAG
GGATCGCGATGAGGACAAAACACAAAGAAGGCACCTTCACGACTTCGTCG
ATCCACCGTTTGTGCTGGACAAAGCAAGCTTTCTAGACCAT
BO24135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MCPH1-RD | 3087 | CG42572-PD | 2426..3084 | 15..673 | 3295 | 100 | Plus |
MCPH1-RC | 2946 | CG42572-PC | 2285..2943 | 15..673 | 3295 | 100 | Plus |
MCPH1-RB | 2481 | CG42572-PB | 2426..2461 | 15..50 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MCPH1-RD | 3360 | CG42572-RD | 2571..3229 | 15..673 | 3295 | 100 | Plus |
MCPH1-RC | 3149 | CG42572-RC | 2360..3018 | 15..673 | 3295 | 100 | Plus |
MCPH1-RB | 2872 | CG42572-RB | 2571..2606 | 15..50 | 180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11896128..11896534 | 673..267 | 2035 | 100 | Minus |
2R | 25286936 | 2R | 11896596..11896816 | 268..48 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 11897108..11897143 | 50..15 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:25:41 has no hits.
BO24135.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:36 Download gff for
BO24135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30038-RA | 96..752 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:09 Download gff for
BO24135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MCPH1-RC | 2362..3018 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:07 Download gff for
BO24135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MCPH1-RC | 2362..3018 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:07 Download gff for
BO24135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11896126..11896532 | 269..675 | 99 | <- | Minus |
2R | 11896596..11896814 | 50..268 | 100 | <- | Minus |
2R | 11897109..11897141 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:09 Download gff for
BO24135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7783631..7784037 | 269..675 | 99 | <- | Minus |
arm_2R | 7784101..7784319 | 50..268 | 100 | <- | Minus |
arm_2R | 7784614..7784646 | 17..49 | 100 | | Minus |
BO24135.pep Sequence
Translation from 16 to 691
> BO24135.pep
MHQEQINVIRKALRKLRGMRLDPTVTQHTTHLVSLEPRRTLNLLRGLMRG
VWIVSYQWVLASIRAGKWINEEPYELTRFSRAIEICRTERQAFGVHYQCE
LFRFMEPFYVSSLCRPVQFNNMKELLLLGGATLTENRFKAKYIIGDKRRA
EDDRVYLDPYWVLDSITNMQIQRFGKYLMKSAIISADGIRYEDPRDRDED
KTQRRHLHDFVDPPFVLDKASFLDH
BO24135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MCPH1-PC | 981 | CG42572-PC | 763..981 | 1..219 | 1157 | 100 | Plus |
MCPH1-PD | 1028 | CG42572-PD | 810..1028 | 1..219 | 1157 | 100 | Plus |