BO24144.complete Sequence
604 bp assembled on 2010-05-05
GenBank Submission: KX796084
> BO24144.complete
GAAGTTATCAGTCGACATGGAATACAGCGGAGTGCGGTTACCCGGAATTT
TTTGTCCGGATGAAAGCATTGAGCAGTTTGCAAGACTTTACGGAAGTGAT
AATTTTAGCAAAATGATGATAATAGCCACGACCAGTAGTCCTCCGAGGAC
TATGCAGGCCACAACTCATTCACCTCCAGGAATGATGGGGGGGAATCCGT
CCAGGTTTCAAGGGAATGCATCAACAGCTCACGATCGAAATCTAAAAGTT
AATCACCGATATGCTCATAATGTGCAGGCCCCATCCAATCCGCACCCGGT
CATAATGGGTCCGTCCAGGTTTCATGGAAATCTACCACCTATTCAGGATA
CATATTTAAAAAGTAGTCCCCGAGATCAAGGATTTCATGCTTATGGGGCC
GTGCATAGAGGCTGTGGTGACCACTATAGTTATTCGGCAAATTTGCAGAA
CTCTAAACCTGAATATCCTACAAGGCCCGACCAATCGGGCACACAAAATC
CGGGACAAATGTACTGCAATACTCAGCACTATCAGAATCTGAATTTTTAT
CATCCACCTCCACCTGGACCCAGATTTCCCTGGCTTGCAAGCTTTCTAGA
CCAT
BO24144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31206-RA | 573 | CG31206-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
CG31206-RB | 597 | CG31206-PB | 276..594 | 268..586 | 1595 | 100 | Plus |
CG31206-RB | 597 | CG31206-PB | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31206-RA | 832 | CG31206-RA | 79..650 | 15..586 | 2860 | 100 | Plus |
CG31206-RB | 856 | CG31206-RB | 356..674 | 268..586 | 1595 | 100 | Plus |
CG31206-RB | 856 | CG31206-RB | 79..332 | 15..268 | 1270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20107118..20107332 | 586..372 | 1075 | 100 | Minus |
3R | 32079331 | 3R | 20107573..20107778 | 267..62 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 20107396..20107500 | 372..268 | 525 | 100 | Minus |
3R | 32079331 | 3R | 20107834..20107885 | 66..15 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:21:39 has no hits.
BO24144.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:01 Download gff for
BO24144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31206-RA | 119..688 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:28 Download gff for
BO24144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31206-RA | 81..650 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:33 Download gff for
BO24144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31206-RA | 81..650 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:33 Download gff for
BO24144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20107116..20107331 | 373..588 | 99 | <- | Minus |
3R | 20107396..20107500 | 268..372 | 100 | <- | Minus |
3R | 20107573..20107778 | 62..267 | 100 | <- | Minus |
3R | 20107839..20107883 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:28 Download gff for
BO24144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15932838..15933053 | 373..588 | 99 | <- | Minus |
arm_3R | 15933118..15933222 | 268..372 | 100 | <- | Minus |
arm_3R | 15933295..15933500 | 62..267 | 100 | <- | Minus |
arm_3R | 15933561..15933605 | 17..61 | 100 | | Minus |
BO24144.pep Sequence
Translation from 16 to 604
> BO24144.pep
MEYSGVRLPGIFCPDESIEQFARLYGSDNFSKMMIIATTSSPPRTMQATT
HSPPGMMGGNPSRFQGNASTAHDRNLKVNHRYAHNVQAPSNPHPVIMGPS
RFHGNLPPIQDTYLKSSPRDQGFHAYGAVHRGCGDHYSYSANLQNSKPEY
PTRPDQSGTQNPGQMYCNTQHYQNLNFYHPPPPGPRFPWLASFLDH
BO24144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31206-PA | 190 | CG31206-PA | 1..190 | 1..190 | 1070 | 100 | Plus |
CG31206-PB | 198 | CG31206-PB | 1..198 | 1..190 | 1051 | 96 | Plus |