BO24166.complete Sequence
904 bp assembled on 2010-05-05
GenBank Submission: KX798410
> BO24166.complete
GAAGTTATCAGTCGACATGGATTCGTCTGAAAGCCAATCGCAAATGGATG
ACCAAGATGCTCGCATACTGCGTCTGCAAAATCTGATCGAAAAGAATATT
GAGATAGAGCAACAAATCGAAAACAACACCATCGGAGAGTCTATCACGGC
CATAGAGGAAATCATTCAGACAGCCAACGATATCAGCAAGGGACATGAAG
ACCGCCGTACAAACTCCACGGAACTTGTCCTGGACACGGAGCTACTGCGT
CGCAATTTCGAAGTTGTGGGAAAAGCTATCCAACATAACACCAACGTCAC
GGATCGAATGGTGGCCACGGCGATCAACGATTTGGTTTTCAAAGAGAGCG
AAGAAGATTGGGATGCTCTTTGTTCATTGGCTATTCAGTTCGGAAGACCA
CTCTTCACCAATGATAGCATGCTGCCCTTCATAGATGTTACTCCAAAGGT
GGTGGTTCAAAAGCAACGTGCTCCTCGCAAAACGAAATCTCAAGTAGATG
AGAAGCGTCCAGAAAAGAGTGACCAATTGGAACGCAAGGACGAAGGAGCA
GCGTCCGTAACCCACATGCTGAAGCAAATAAGACAAATATATCGAGATGG
CAATCAAGAGCCGATTCCGTACTTTAAACTGATTTGCAATCCAAACAATT
TTATGGACACCGTTCAGAACGCTTTGCAACTGTCGTTTCTTGTCAAGGAG
AACTATATTTCCATCGAAAATGGCGAGGATGGTTTGCCATTGGTTCGCGT
TGTGAATTCCAAATCGGTCGAAGGAAACGCACCGTCCCAGGCTATTTGTT
CCATCGATGTTACCTTTTGTGAGAAAATGGTAAAGCACTACAACCTACAT
GAGCCAATGTTAAAAAGACTTCCGGTTAGTGAGAAAGCAAGCTTTCTAGA
CCAT
BO24166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse4-RC | 873 | CG13142-PC | 1..870 | 17..886 | 4350 | 100 | Plus |
Nse4-RB | 873 | CG13142-PB | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse4-RC | 1029 | CG13142-RC | 90..959 | 17..886 | 4350 | 100 | Plus |
Nse4-RB | 1383 | CG13142-RB | 90..959 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10440176..10440505 | 494..823 | 1650 | 100 | Plus |
2L | 23513712 | 2L | 10439669..10439888 | 106..325 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 10439945..10440115 | 326..496 | 855 | 100 | Plus |
2L | 23513712 | 2L | 10439529..10439619 | 17..107 | 455 | 100 | Plus |
2L | 23513712 | 2L | 10440559..10440623 | 822..886 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:27:50 has no hits.
BO24166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:52 Download gff for
BO24166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13142-RB | 90..959 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:02 Download gff for
BO24166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13142-RB | 90..959 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:50 Download gff for
BO24166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nse4-RB | 90..959 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:50 Download gff for
BO24166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10439529..10439619 | 17..107 | 100 | -> | Plus |
2L | 10439671..10439888 | 108..325 | 100 | -> | Plus |
2L | 10439945..10440112 | 326..493 | 100 | -> | Plus |
2L | 10440176..10440505 | 494..823 | 100 | -> | Plus |
2L | 10440561..10440623 | 824..888 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:02 Download gff for
BO24166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10439529..10439619 | 17..107 | 100 | -> | Plus |
arm_2L | 10439671..10439888 | 108..325 | 100 | -> | Plus |
arm_2L | 10439945..10440112 | 326..493 | 100 | -> | Plus |
arm_2L | 10440176..10440505 | 494..823 | 100 | -> | Plus |
arm_2L | 10440561..10440623 | 824..888 | 96 | | Plus |
BO24166.pep Sequence
Translation from 16 to 904
> BO24166.pep
MDSSESQSQMDDQDARILRLQNLIEKNIEIEQQIENNTIGESITAIEEII
QTANDISKGHEDRRTNSTELVLDTELLRRNFEVVGKAIQHNTNVTDRMVA
TAINDLVFKESEEDWDALCSLAIQFGRPLFTNDSMLPFIDVTPKVVVQKQ
RAPRKTKSQVDEKRPEKSDQLERKDEGAASVTHMLKQIRQIYRDGNQEPI
PYFKLICNPNNFMDTVQNALQLSFLVKENYISIENGEDGLPLVRVVNSKS
VEGNAPSQAICSIDVTFCEKMVKHYNLHEPMLKRLPVSEKASFLDH
BO24166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse4-PC | 290 | CG13142-PC | 1..290 | 1..290 | 1477 | 100 | Plus |
Nse4-PB | 290 | CG13142-PB | 1..290 | 1..290 | 1477 | 100 | Plus |