Clone BO24166 Report

Search the DGRC for BO24166

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:241
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG13142-RB
Protein status:BO24166.pep: Imported from assembly
Sequenced Size:904

Clone Sequence Records

BO24166.complete Sequence

904 bp assembled on 2010-05-05

GenBank Submission: KX798410

> BO24166.complete
GAAGTTATCAGTCGACATGGATTCGTCTGAAAGCCAATCGCAAATGGATG
ACCAAGATGCTCGCATACTGCGTCTGCAAAATCTGATCGAAAAGAATATT
GAGATAGAGCAACAAATCGAAAACAACACCATCGGAGAGTCTATCACGGC
CATAGAGGAAATCATTCAGACAGCCAACGATATCAGCAAGGGACATGAAG
ACCGCCGTACAAACTCCACGGAACTTGTCCTGGACACGGAGCTACTGCGT
CGCAATTTCGAAGTTGTGGGAAAAGCTATCCAACATAACACCAACGTCAC
GGATCGAATGGTGGCCACGGCGATCAACGATTTGGTTTTCAAAGAGAGCG
AAGAAGATTGGGATGCTCTTTGTTCATTGGCTATTCAGTTCGGAAGACCA
CTCTTCACCAATGATAGCATGCTGCCCTTCATAGATGTTACTCCAAAGGT
GGTGGTTCAAAAGCAACGTGCTCCTCGCAAAACGAAATCTCAAGTAGATG
AGAAGCGTCCAGAAAAGAGTGACCAATTGGAACGCAAGGACGAAGGAGCA
GCGTCCGTAACCCACATGCTGAAGCAAATAAGACAAATATATCGAGATGG
CAATCAAGAGCCGATTCCGTACTTTAAACTGATTTGCAATCCAAACAATT
TTATGGACACCGTTCAGAACGCTTTGCAACTGTCGTTTCTTGTCAAGGAG
AACTATATTTCCATCGAAAATGGCGAGGATGGTTTGCCATTGGTTCGCGT
TGTGAATTCCAAATCGGTCGAAGGAAACGCACCGTCCCAGGCTATTTGTT
CCATCGATGTTACCTTTTGTGAGAAAATGGTAAAGCACTACAACCTACAT
GAGCCAATGTTAAAAAGACTTCCGGTTAGTGAGAAAGCAAGCTTTCTAGA
CCAT

BO24166.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Nse4-RC 873 CG13142-PC 1..870 17..886 4350 100 Plus
Nse4-RB 873 CG13142-PB 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Nse4-RC 1029 CG13142-RC 90..959 17..886 4350 100 Plus
Nse4-RB 1383 CG13142-RB 90..959 17..886 4350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10440176..10440505 494..823 1650 100 Plus
2L 23513712 2L 10439669..10439888 106..325 1100 100 Plus
2L 23513712 2L 10439945..10440115 326..496 855 100 Plus
2L 23513712 2L 10439529..10439619 17..107 455 100 Plus
2L 23513712 2L 10440559..10440623 822..886 325 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:27:50 has no hits.

BO24166.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:52 Download gff for BO24166.complete
Subject Subject Range Query Range Percent Splice Strand
CG13142-RB 90..959 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:02 Download gff for BO24166.complete
Subject Subject Range Query Range Percent Splice Strand
CG13142-RB 90..959 17..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:50 Download gff for BO24166.complete
Subject Subject Range Query Range Percent Splice Strand
Nse4-RB 90..959 17..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:50 Download gff for BO24166.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10439529..10439619 17..107 100 -> Plus
2L 10439671..10439888 108..325 100 -> Plus
2L 10439945..10440112 326..493 100 -> Plus
2L 10440176..10440505 494..823 100 -> Plus
2L 10440561..10440623 824..888 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:02 Download gff for BO24166.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10439529..10439619 17..107 100 -> Plus
arm_2L 10439671..10439888 108..325 100 -> Plus
arm_2L 10439945..10440112 326..493 100 -> Plus
arm_2L 10440176..10440505 494..823 100 -> Plus
arm_2L 10440561..10440623 824..888 96   Plus

BO24166.pep Sequence

Translation from 16 to 904

> BO24166.pep
MDSSESQSQMDDQDARILRLQNLIEKNIEIEQQIENNTIGESITAIEEII
QTANDISKGHEDRRTNSTELVLDTELLRRNFEVVGKAIQHNTNVTDRMVA
TAINDLVFKESEEDWDALCSLAIQFGRPLFTNDSMLPFIDVTPKVVVQKQ
RAPRKTKSQVDEKRPEKSDQLERKDEGAASVTHMLKQIRQIYRDGNQEPI
PYFKLICNPNNFMDTVQNALQLSFLVKENYISIENGEDGLPLVRVVNSKS
VEGNAPSQAICSIDVTFCEKMVKHYNLHEPMLKRLPVSEKASFLDH

BO24166.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Nse4-PC 290 CG13142-PC 1..290 1..290 1477 100 Plus
Nse4-PB 290 CG13142-PB 1..290 1..290 1477 100 Plus