Clone BO24169 Report

Search the DGRC for BO24169

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:241
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG10317-RC
Protein status:BO24169.pep: Imported from assembly
Sequenced Size:679

Clone Sequence Records

BO24169.complete Sequence

679 bp assembled on 2012-04-24

GenBank Submission: KX798869

> BO24169.complete
GAAGTTATCAGTCGACATGAACACCAACACCATCAACCCTCAGGACGACT
GTAGTAACATCTCCAACAAGGATGTAGAGATCGATCGGGACCAGGAGCTC
CAGACATCATCCGAAATCCAGACACCGGAAACACCGCAGACAGGGCGGCG
CAAAAGGATGGACACGCCCATTCGAGTACGTGACATGATCAACCTTTACA
ACTTTGCCACTCAAAAGAACCAGGAACTGGAGATGGCCAAGTCCCTTTAC
TTTGGCGCCATGTCAGAGGAAAACCAGAGGACGGATCTTGAGGGCGGTAG
TAGCCTTTGCAACATGTCCATGTCGGACGACAAGGAAAAAGAAAATGAGA
GTATCCTCCGAGTGAACAAGGAGTCTGCAGTCTTCCAATCGGCCAATACT
GAGCTTCCGTCTGATCCGAATACAGTAGAAAGGTCCTATCAAAGCAAAAC
TACAATTCGACACACTAATAAAGGCGTGCGTATAATCATCGACATATTTT
TTGATAAAAAAGATAGCGAGATAGACATAGTGGGCAGCCGCGTGGAGACG
GACATCCCCGAGAGCCGCATCCTGTCCGATTTCCAGCAGCATTCGCTGGA
CATGAAGAACCAGGAGCTAAAGCCGGGGATCCAGGATGGATCGAGTACCC
CCAAGTCCGCGGCAAGCTTTCTAGACCAT

BO24169.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10317-RD 648 CG10317-PD 1..645 17..661 3225 100 Plus
CG10317-RC 648 CG10317-PC 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10317-RD 1481 CG10317-RD 202..847 16..661 3230 100 Plus
CG10317-RC 965 CG10317-RC 202..847 16..661 3230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16370003..16370332 345..16 1650 100 Minus
3R 32079331 3R 16369489..16369680 661..470 960 100 Minus
3R 32079331 3R 16369816..16369944 474..346 645 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:28:02 has no hits.

BO24169.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 11:57:03 Download gff for BO24169.complete
Subject Subject Range Query Range Percent Splice Strand
CG10317-RB 203..665 17..480 99 == Plus
CG10317-RB 666..808 519..663 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:28 Download gff for BO24169.complete
Subject Subject Range Query Range Percent Splice Strand
CG10317-RD 203..847 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:00 Download gff for BO24169.complete
Subject Subject Range Query Range Percent Splice Strand
CG10317-RC 203..847 17..663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:50 Download gff for BO24169.complete
Subject Subject Range Query Range Percent Splice Strand
CG10317-RC 203..847 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:50 Download gff for BO24169.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16369487..16369676 474..663 98 <- Minus
3R 16369817..16369944 346..473 100 <- Minus
3R 16370003..16370331 17..345 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:00 Download gff for BO24169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12195725..12196053 17..345 100   Minus
arm_3R 12195209..12195398 474..663 98 <- Minus
arm_3R 12195539..12195666 346..473 100 <- Minus

BO24169.pep Sequence

Translation from 16 to 679

> BO24169.pep
MNTNTINPQDDCSNISNKDVEIDRDQELQTSSEIQTPETPQTGRRKRMDT
PIRVRDMINLYNFATQKNQELEMAKSLYFGAMSEENQRTDLEGGSSLCNM
SMSDDKEKENESILRVNKESAVFQSANTELPSDPNTVERSYQSKTTIRHT
NKGVRIIIDIFFDKKDSEIDIVGSRVETDIPESRILSDFQQHSLDMKNQE
LKPGIQDGSSTPKSAASFLDH

BO24169.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10317-PD 215 CG10317-PD 1..215 1..215 1096 100 Plus
CG10317-PC 215 CG10317-PC 1..215 1..215 1096 100 Plus