BO24171.complete Sequence
895 bp assembled on 2010-05-05
GenBank Submission: KX799375
> BO24171.complete
GAAGTTATCAGTCGACATGACGACTAAAAGAACAAGGTTCGATAAAATGA
ACCTGGGAGTACCCGTTCACTCGGACCCCTATGAAGTGGAAAATGAATCG
GCCTCGTCAATAAAAAGAGAAACCGGCGAGAAGGTCATGTCTCATAAGGA
GCTAATGGAAAAACTGCATAAGGAGGTGAAGCTCACGACGCCGGACTTCT
TCGCCCATGATCCATCCTGCAGCTCGGACGACTCCGAAGATTTCGAATTC
CTGGAGACTATCAAAGAGCGAGCCAGACGCATATCCTTCGTACGACGCCG
AAAGCTGCACTACACTGAGTTCTCAACGGTCGAGTTGGCCAGGCGTCTGA
TCCGCGAGGAGTTCACAGAGTCATCGGAGAGTCAACTAAGCGTGGATGAT
GAACATATCTCCGAGATCGCCGAAGAGGAGTGTCCGCCCTGCGGCACAGA
CTCCGACGACTTACTTCCGTACTTCCAATACGATCGGGCTACAGACCAAT
CGATGATTTCCGACGACAGTCTGCCAAAGGAGGATCCCGAGCCCGGATTC
CATCCCGCCCATCATTGCTATAATAAGCTTATAAGCCAGACTCCTGATCC
GCCGATAGTGTACGTTCCCGCGGAACCAGAACCGCAACCGGAACCGCAAC
CGGAACCGCCAGTGGAACCGCGACCGGAACCGGAACCAGAACCAGAACCG
GAAACAGTACTACCACCAACTGCTCCGGAAGTCATTGATAAAACAGCTCC
AGAAGAAGAAAAACACACTAGGGTCCTTGACCGTGGCGAAAATATTGACC
TAAAGAATTTGAGCGCCATACAGAAAAACATAAGTTCGAGTGTGAAAAAA
CATACTGGTCAAAAAACGCGAAATTTAGCAAGCTTTCTAGACCAT
BO24171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12620-RB | 864 | CG12620-PB | 1..861 | 17..877 | 4305 | 100 | Plus |
CG12620-RA | 864 | CG12620-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12620-RB | 1546 | CG12620-RB | 84..945 | 16..877 | 4310 | 100 | Plus |
CG12620-RA | 1184 | CG12620-RA | 84..945 | 16..877 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17087724..17088585 | 16..877 | 4310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:28:16 has no hits.
BO24171.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:56 Download gff for
BO24171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12620-RA | 85..945 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:14 Download gff for
BO24171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12620-RA | 85..945 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:58 Download gff for
BO24171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12620-RA | 85..945 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:58 Download gff for
BO24171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17087725..17088585 | 17..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:14 Download gff for
BO24171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17087725..17088585 | 17..879 | 99 | | Plus |
BO24171.pep Sequence
Translation from 16 to 895
> BO24171.pep
MTTKRTRFDKMNLGVPVHSDPYEVENESASSIKRETGEKVMSHKELMEKL
HKEVKLTTPDFFAHDPSCSSDDSEDFEFLETIKERARRISFVRRRKLHYT
EFSTVELARRLIREEFTESSESQLSVDDEHISEIAEEECPPCGTDSDDLL
PYFQYDRATDQSMISDDSLPKEDPEPGFHPAHHCYNKLISQTPDPPIVYV
PAEPEPQPEPQPEPPVEPRPEPEPEPEPETVLPPTAPEVIDKTAPEEEKH
TRVLDRGENIDLKNLSAIQKNISSSVKKHTGQKTRNLASFLDH
BO24171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12620-PB | 287 | CG12620-PB | 1..287 | 1..287 | 1522 | 100 | Plus |
CG12620-PA | 287 | CG12620-PA | 1..287 | 1..287 | 1522 | 100 | Plus |
CG6380-PB | 293 | CG6380-PB | 22..251 | 4..237 | 259 | 30.9 | Plus |
CG6380-PA | 293 | CG6380-PA | 22..251 | 4..237 | 259 | 30.9 | Plus |