Clone BO24171 Report

Search the DGRC for BO24171

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:241
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG12620-RA
Protein status:BO24171.pep: Imported from assembly
Sequenced Size:895

Clone Sequence Records

BO24171.complete Sequence

895 bp assembled on 2010-05-05

GenBank Submission: KX799375

> BO24171.complete
GAAGTTATCAGTCGACATGACGACTAAAAGAACAAGGTTCGATAAAATGA
ACCTGGGAGTACCCGTTCACTCGGACCCCTATGAAGTGGAAAATGAATCG
GCCTCGTCAATAAAAAGAGAAACCGGCGAGAAGGTCATGTCTCATAAGGA
GCTAATGGAAAAACTGCATAAGGAGGTGAAGCTCACGACGCCGGACTTCT
TCGCCCATGATCCATCCTGCAGCTCGGACGACTCCGAAGATTTCGAATTC
CTGGAGACTATCAAAGAGCGAGCCAGACGCATATCCTTCGTACGACGCCG
AAAGCTGCACTACACTGAGTTCTCAACGGTCGAGTTGGCCAGGCGTCTGA
TCCGCGAGGAGTTCACAGAGTCATCGGAGAGTCAACTAAGCGTGGATGAT
GAACATATCTCCGAGATCGCCGAAGAGGAGTGTCCGCCCTGCGGCACAGA
CTCCGACGACTTACTTCCGTACTTCCAATACGATCGGGCTACAGACCAAT
CGATGATTTCCGACGACAGTCTGCCAAAGGAGGATCCCGAGCCCGGATTC
CATCCCGCCCATCATTGCTATAATAAGCTTATAAGCCAGACTCCTGATCC
GCCGATAGTGTACGTTCCCGCGGAACCAGAACCGCAACCGGAACCGCAAC
CGGAACCGCCAGTGGAACCGCGACCGGAACCGGAACCAGAACCAGAACCG
GAAACAGTACTACCACCAACTGCTCCGGAAGTCATTGATAAAACAGCTCC
AGAAGAAGAAAAACACACTAGGGTCCTTGACCGTGGCGAAAATATTGACC
TAAAGAATTTGAGCGCCATACAGAAAAACATAAGTTCGAGTGTGAAAAAA
CATACTGGTCAAAAAACGCGAAATTTAGCAAGCTTTCTAGACCAT

BO24171.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12620-RB 864 CG12620-PB 1..861 17..877 4305 100 Plus
CG12620-RA 864 CG12620-PA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12620-RB 1546 CG12620-RB 84..945 16..877 4310 100 Plus
CG12620-RA 1184 CG12620-RA 84..945 16..877 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17087724..17088585 16..877 4310 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:28:16 has no hits.

BO24171.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:56 Download gff for BO24171.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 85..945 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:14 Download gff for BO24171.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 85..945 17..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:58 Download gff for BO24171.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 85..945 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:58 Download gff for BO24171.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17087725..17088585 17..879 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:14 Download gff for BO24171.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17087725..17088585 17..879 99   Plus

BO24171.pep Sequence

Translation from 16 to 895

> BO24171.pep
MTTKRTRFDKMNLGVPVHSDPYEVENESASSIKRETGEKVMSHKELMEKL
HKEVKLTTPDFFAHDPSCSSDDSEDFEFLETIKERARRISFVRRRKLHYT
EFSTVELARRLIREEFTESSESQLSVDDEHISEIAEEECPPCGTDSDDLL
PYFQYDRATDQSMISDDSLPKEDPEPGFHPAHHCYNKLISQTPDPPIVYV
PAEPEPQPEPQPEPPVEPRPEPEPEPEPETVLPPTAPEVIDKTAPEEEKH
TRVLDRGENIDLKNLSAIQKNISSSVKKHTGQKTRNLASFLDH

BO24171.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12620-PB 287 CG12620-PB 1..287 1..287 1522 100 Plus
CG12620-PA 287 CG12620-PA 1..287 1..287 1522 100 Plus
CG6380-PB 293 CG6380-PB 22..251 4..237 259 30.9 Plus
CG6380-PA 293 CG6380-PA 22..251 4..237 259 30.9 Plus