BO24172.complete Sequence
976 bp assembled on 2010-05-05
GenBank Submission: KX797137
> BO24172.complete
GAAGTTATCAGTCGACATGGCATCTGGGTTCGTGAACAATAAGCGCAAGC
GGGATGAAGCGCACAATCAGTTCATCTGTCCCATTGTCTACACAAATGAG
TTGCCCACTTATCCAAAGGATTGCAAGTTTCTGCCCTGTGGCCAGAATAT
CCAGGAGTACTGCAAGGAGCCGGTTTCGATTCCCAAACTGGACACTTGTT
TTTCGCTAAATTTCAAAGGACTTCATGAGCTATTCTCCGTTAATTTGATG
GATCAGTCGGCTTACGATAAGCTTTCCGAGAATGTGCAGCCAATGAATCC
CAGAGAAGCTGATCTACTTAAGGACATAAGAGCCCTAGACTGGGACTTCG
CCAGACTCGAACCAAGTCGCGCTCAGGAATGCGCCAAGATGTTCGCCAAG
GAGCGAGTGCATCCACCTCTCCCAGGACTACAGCGTTCTGTGGCGGTGCC
CAAGGCCCCAAAAGACCTGCAGCCGGTCAGCCTGGAGCAACAAAAGGCGA
TGATTGATGCGAGCTTCAAGGATATTGGCAAACCCCTCTACCGACATCCC
ACCAATCCGGGTAGCAATGCCTACCCTGTGCAGGTCTTGCCAGTCTTTCC
CGATACGGATTTGCAGAAATATAGCTTCGTCCAGATGAGTTTTGATAATC
CACCCCAAAATAGCAACCAGGGACTAATCAGGGACTGCGGAAGCTGTCTG
ATCAACTTCAGTTTCGTCCAGGACATTGCGGACTCTACCGAAAAGGTTTA
CGTATCCGACCATCGCTACAGAGAGGAAAAAGCCGACGATAGCTTGGAGC
GCGGTGAGGGTTACATACTCCGCGAGGAGAATGACGCCATCTTTTACGTT
GGTGTCGACAAATACATCAAATTAAGGCGGGAACGTCCACGCCCACACGT
TTCGGCTAACAAGTTTCTGCTGAAGGTCCAGCGTGTGGGAATGAATACAA
CTACCGATGCAAGCTTTCTAGACCAT
BO24172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12674-RA | 945 | CG12674-PA | 1..942 | 17..958 | 4710 | 100 | Plus |
| CG12674-RB | 942 | CG12674-PB | 1..939 | 17..958 | 4630 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12674-RA | 1219 | CG12674-RA | 159..1100 | 17..958 | 4710 | 100 | Plus |
| CG12674-RB | 1216 | CG12674-RB | 159..1097 | 17..958 | 4630 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2080208..2081066 | 64..922 | 4295 | 100 | Plus |
| 2L | 23513712 | 2L | 2080077..2080123 | 17..63 | 235 | 100 | Plus |
| 2L | 23513712 | 2L | 2081131..2081167 | 922..958 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:28:26 has no hits.
BO24172.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:57 Download gff for
BO24172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12674-RA | 101..1042 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:19 Download gff for
BO24172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12674-RA | 159..1100 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:02 Download gff for
BO24172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12674-RA | 159..1100 | 17..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:02 Download gff for
BO24172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2080077..2080123 | 17..63 | 100 | -> | Plus |
| 2L | 2080208..2081066 | 64..922 | 100 | -> | Plus |
| 2L | 2081132..2081167 | 923..960 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:19 Download gff for
BO24172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2080077..2080123 | 17..63 | 100 | -> | Plus |
| arm_2L | 2080208..2081066 | 64..922 | 100 | -> | Plus |
| arm_2L | 2081132..2081167 | 923..960 | 94 | | Plus |
BO24172.pep Sequence
Translation from 16 to 976
> BO24172.pep
MASGFVNNKRKRDEAHNQFICPIVYTNELPTYPKDCKFLPCGQNIQEYCK
EPVSIPKLDTCFSLNFKGLHELFSVNLMDQSAYDKLSENVQPMNPREADL
LKDIRALDWDFARLEPSRAQECAKMFAKERVHPPLPGLQRSVAVPKAPKD
LQPVSLEQQKAMIDASFKDIGKPLYRHPTNPGSNAYPVQVLPVFPDTDLQ
KYSFVQMSFDNPPQNSNQGLIRDCGSCLINFSFVQDIADSTEKVYVSDHR
YREEKADDSLERGEGYILREENDAIFYVGVDKYIKLRRERPRPHVSANKF
LLKVQRVGMNTTTDASFLDH
BO24172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12674-PA | 314 | CG12674-PA | 1..314 | 1..314 | 1672 | 100 | Plus |
| CG12674-PB | 313 | CG12674-PB | 1..313 | 1..314 | 1655 | 99.7 | Plus |
