BO24176.complete Sequence
1075 bp assembled on 2010-05-05
> BO24176.complete
GAAGTTATCAGTCGACATGGGACGTTTTCAACGCTATGAACTGGACTTGG
CCCAGCTGGCGATCTTCATGAGATTGGATCGTATTGCATTGGTCGATTTT
GTGGCTGAGACTTATCGAGTGAGAGCTGGGATCATGTTTCGGCAGCCACC
TCTCTCGGCAGTGGCCAATATATTCGCTATGCCCTTTGAGAACGATGTGT
GGGTGTCCATTTTGATGCTACTGATCATCACGACCGTGGTCTTGGTTCTG
GAACTCTTCTTTTCGCCACACAACCACGACATGTCCTACATGGATACACT
AAATTTTGTTTGGGGTGCTATGTGCCAGCAGGGTTTCTACGTAGAGGTGC
GGAACCGATCGGCGAGAATCATTGTCTTCACCACATTTGTTGCAGCTCTC
TTCTTGTTCACCTCGTTTTCGGCCAATATTGTGGCCCTGCTGCAAAGTCC
GTCGGATGCTATCCAGTCATTGTCTGATCTGGGACAATCGCCTCTAGAAA
TCGGAGTTCAGGACACGCAATATAATAAAATATACTTCACCGAGTCCACA
GATCCCGTAACGAAGAATCTTTACCACAAAAAGATCGCGTCCAAAGGTGA
AAATATCTATATGCGCCCCTTGCTAGGAATGGAGAAAATGCGAACCGGCT
TATTTGCATACCAGGTTGAACTCCAGGCTGGTTACCAAATCGTCAGCGAC
ACCTTCAGCGAGCCGGAAAAGTGCGGATTAATGGAACTGGAGCCTTTTCA
GCTGCCCATGCTAGCTATTCCAACAAGGAAAAACTTTCCTTACAAGGAGC
TCATTCGAAGGCAACTACGCTGGCAGCGAGAAGTAAGCTTGGTGAATCGC
GAGGAGCGAAAGTGGATTCCTCAGAAGCCCAAATGCGAGGGCGGAGTTGG
CGGATTTGTCTCCATTGGCATTACAGAATGCCGGTATGCTTTGGGGATCT
TTGGGTGTGGAGCTGCTGTCAGTTTTGTCCTGTTTCTTTTCGAGTTTATC
TTCAGACACTTCAAACAAGTTTATCGCATAATTAAAGGCTATAGAGAAGT
GCAGCGCGCAAGCTTTCTAGACCAT
BO24176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir75d-RC | 2028 | CG14076-PC | 984..2025 | 16..1057 | 5210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14077-RB | 3077 | CG14077-RB | 1749..2790 | 16..1057 | 5210 | 100 | Plus |
| Ir75d-RC | 2312 | CG14076-RC | 984..2025 | 16..1057 | 5210 | 100 | Plus |
| CG6841-RB | 3382 | CG6841-RB | 2955..3198 | 1057..814 | 1220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18909024..18909821 | 813..16 | 3990 | 100 | Minus |
| 3L | 28110227 | 3L | 18908547..18908790 | 1057..814 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:22:46 has no hits.
BO24176.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:13 Download gff for
BO24176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14077-RB | 1750..2790 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:55 Download gff for
BO24176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir75d-RC | 985..2025 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:57 Download gff for
BO24176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir75d-RC | 985..2025 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:57 Download gff for
BO24176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18909024..18909820 | 17..813 | 100 | | Minus |
| 3L | 18908545..18908790 | 814..1059 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:55 Download gff for
BO24176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18902124..18902920 | 17..813 | 100 | | Minus |
| arm_3L | 18901645..18901890 | 814..1059 | 99 | <- | Minus |
BO24176.pep Sequence
Translation from 16 to 1075
> BO24176.pep
MGRFQRYELDLAQLAIFMRLDRIALVDFVAETYRVRAGIMFRQPPLSAVA
NIFAMPFENDVWVSILMLLIITTVVLVLELFFSPHNHDMSYMDTLNFVWG
AMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSFSANIVALLQSPSDAIQ
SLSDLGQSPLEIGVQDTQYNKIYFTESTDPVTKNLYHKKIASKGENIYMR
PLLGMEKMRTGLFAYQVELQAGYQIVSDTFSEPEKCGLMELEPFQLPMLA
IPTRKNFPYKELIRRQLRWQREVSLVNREERKWIPQKPKCEGGVGGFVSI
GITECRYALGIFGCGAAVSFVLFLFEFIFRHFKQVYRIIKGYREVQRASF
LDH
BO24176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir75d-PC | 675 | CG14076-PC | 329..675 | 1..347 | 1791 | 100 | Plus |
| Ir84a-PB | 644 | CG10101-PB | 296..636 | 1..337 | 283 | 27.5 | Plus |
| Ir31a-PC | 648 | CG31718-PC | 280..640 | 1..332 | 255 | 23.4 | Plus |
| Ir31a-PD | 629 | CG31718-PD | 280..600 | 1..291 | 237 | 23.9 | Plus |
| Ir64a-PA | 859 | CG10633-PA | 563..804 | 91..290 | 234 | 28.5 | Plus |
