BO24181.complete Sequence
883 bp assembled on 2010-05-05
GenBank Submission: KX797781
> BO24181.complete
GAAGTTATCAGTCGACATGAACGGAGTAACTTATTTTGTGCTACTTCTTA
GCTCTACTTTGTTAGCTCTAGGTGGAGTTCAAAGTAAGCCCATGGGCAAT
GTCATCGATTTGGACAAGTATTTCGAGGAGGCAGACCTTAATTCCCAGGA
GCGAGTTGTTGGCGGTTACGATGTGCCAGAGGATGAATATGTTCCCTACC
AGGTGTCCATGCAGTTTCTTACCCGCAGTGGAAAGATGCGACACTTCTGT
GGTGGATCCCTGATAGCCCCAAATCGCGTCCTTACCGCTGCCCACTGCGT
CAATGGCCAGAATGCCAGTCGAATTAGCGTAGTTGCTGGGATTAGGGATC
TCAACGATAGCTCCGGCTTCCGATCGCAGGTGCAGTCGTACGAGATGAAC
GAGAACTACCAGGAGCTGGTGACTAGTGACATTGCCATCCTCAAGATCGA
TCCGCCCTTTGAGCTGGACGAGAAGCGTGTGTCCACCATCGACGTCAGTG
GATCGGACATGGTAGGTGCCGATCAGGAGGTTCTCCTCACCGGATGGGGT
TCTGTCTTCCACTTTGGCACAGGTCCTTTCGCCAAATATCCCACTGTACT
CCAGAAACTCGACTACAAGACACTGAGCAATTCCAAGTGCAAGGAGACGA
TGACCCAGCTGACGGACACAGAGATCTGTGCCTTGGAAAGGTTTGGCAAG
GGTGCCTGTAATGGCGATTCTGGCGGTCCTTTGGTGATGAAGAGTGGTGA
GTCCTATAAACAGGTGGGCGTCGTCTCCTATGGAACTGCATTCTGTGCCT
CGAACAATCCTGATGTCTATACCAGAGTGTCCATGTTTGACGGTTGGATT
AAGGAAAGAATGGTCGCAAGCTTTCTAGACCAT
BO24181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12256-RA | 852 | CG12256-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12256-RA | 935 | CG12256-RA | 1..850 | 16..865 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12225581..12226183 | 713..111 | 3015 | 100 | Minus |
| 3R | 32079331 | 3R | 12225367..12225523 | 865..709 | 770 | 99.4 | Minus |
| 3R | 32079331 | 3R | 12226245..12226339 | 110..16 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:29:32 has no hits.
BO24181.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 13:05:09 Download gff for
BO24181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12256-RA | 2..850 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:47 Download gff for
BO24181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12256-RA | 2..850 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:24 Download gff for
BO24181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12256-RA | 2..850 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:24 Download gff for
BO24181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12225365..12225519 | 713..867 | 98 | <- | Minus |
| 3R | 12225582..12226183 | 111..712 | 100 | <- | Minus |
| 3R | 12226245..12226338 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:47 Download gff for
BO24181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8051087..8051241 | 713..867 | 98 | <- | Minus |
| arm_3R | 8051304..8051905 | 111..712 | 100 | <- | Minus |
| arm_3R | 8051967..8052060 | 17..110 | 100 | | Minus |
BO24181.pep Sequence
Translation from 16 to 883
> BO24181.pep
MNGVTYFVLLLSSTLLALGGVQSKPMGNVIDLDKYFEEADLNSQERVVGG
YDVPEDEYVPYQVSMQFLTRSGKMRHFCGGSLIAPNRVLTAAHCVNGQNA
SRISVVAGIRDLNDSSGFRSQVQSYEMNENYQELVTSDIAILKIDPPFEL
DEKRVSTIDVSGSDMVGADQEVLLTGWGSVFHFGTGPFAKYPTVLQKLDY
KTLSNSKCKETMTQLTDTEICALERFGKGACNGDSGGPLVMKSGESYKQV
GVVSYGTAFCASNNPDVYTRVSMFDGWIKERMVASFLDH
BO24181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12256-PA | 283 | CG12256-PA | 1..283 | 1..283 | 1473 | 100 | Plus |
| CG17404-PB | 275 | CG17404-PB | 2..269 | 3..278 | 639 | 50.7 | Plus |
| CG3916-PA | 267 | CG3916-PA | 27..259 | 43..280 | 458 | 42.5 | Plus |
| CG1304-PA | 260 | CG1304-PA | 31..254 | 46..279 | 315 | 35 | Plus |
| Ser6-PA | 259 | CG2071-PA | 31..255 | 46..280 | 310 | 34.4 | Plus |
