BO24190.complete Sequence
1060 bp assembled on 2010-05-05
GenBank Submission: KX798636
> BO24190.complete
GAAGTTATCAGTCGACATGAGCTGCTTTGGCTGCGGTCGCAAATATGGCC
TATTCTGCAAGGAGTATGGATGCCCCAACTGCGGCTACTCATTCTGCTCC
AAGTGCTTGAAGAGACCAATGCCCGTGCCCCGTCATGCAGGAAAGGTGCA
CAATGTGTGCCTCATATGCTACGACAAACTATCCAAACTCCAGGCGAGCG
CCGATGCCGAGAAAGTTATAGACTGTGATGCTTTGCCGGGGATCTTAGTC
ACCAAAATGAACCTGGCTCCTCCATCCAAAAGTTCAGATGGCGCCGATGC
CCTATTCAACGACAGCCTGCCTGTGGAGGAGCTGCCACAGGCATTGGTTC
CCAGTTCCAGTTCGTCACCACATTCCAAAGATCACAAGGATCATATTGAT
GAGAACCTGGACAGTGAGTTGACCAAACGAATGCAGGACTATAAACGAGT
TGATGCCACCGATGATGAGATCCGCACCCGTCTGGCCAATCTCACTGGGA
TGCCGCATACGAAAAGCTACGATAAGAAAGATCTGCTACTGTCCACCGAC
CAAAGAAACGATCAGGAGAAAATGAGGGACTTGCTCGCACAATTCGTTGA
CGAAGCCCAACTGGATCAAAATATCAGCAGGCAGAGGGATGACTCAATTT
CCGACATTGAGAGACGTCTGCGAGCTCTGCGCGATACACCCGTCGATTCC
GATGCATGCCCATCGAGATCCCAGATGGAAAGTATCGCGGACAACGAAGA
GGATGACGAGACACTTCTACAGAACATATTGAAAAAGTATGTAGCAGAAT
CGCGCTTACCAGAACCTTCCGAGAGTGAAATTAGTCCAATTAACACTGAG
TCGCCCGGCAACACCGAAGAATTGCCCTGGTGCAATATTTGTAACGAAGA
CGCCGACTTCCGATGCCACGGATGTGGTGGGGAACTCTTTTGCACTCTAT
GCTATAAGGAGTGCCACGATGATGACGAGGAGTACCGTGCTCACGTTAAG
GAAAAGTATTCGGCTCCGCCAAAGCTTAAAGAAAATCACTTCGCAAGCTT
TCTAGACCAT
BO24190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15602-RB | 1029 | CG15602-PB | 1..1026 | 17..1042 | 5130 | 100 | Plus |
| CG15602-RA | 1029 | CG15602-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15602-RB | 1342 | CG15602-RB | 249..1274 | 17..1042 | 5130 | 100 | Plus |
| CG15602-RA | 1172 | CG15602-RA | 79..1104 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15800096..15800573 | 310..787 | 2390 | 100 | Plus |
| X | 23542271 | X | 15800637..15800893 | 786..1042 | 1285 | 100 | Plus |
| X | 23542271 | X | 15799791..15800037 | 63..309 | 1235 | 100 | Plus |
| X | 23542271 | X | 15799674..15799721 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1781..1824 | 1000..957 | 112 | 72.7 | Minus |
BO24190.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:42:49 Download gff for
BO24190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15602-RA | 79..1104 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:41 Download gff for
BO24190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15602-RA | 79..1104 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:12 Download gff for
BO24190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15602-RA | 79..1104 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:12 Download gff for
BO24190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15799674..15799721 | 17..64 | 100 | -> | Plus |
| X | 15799793..15800037 | 65..309 | 100 | -> | Plus |
| X | 15800639..15800893 | 788..1044 | 99 | | Plus |
| X | 15800096..15800573 | 310..787 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:41 Download gff for
BO24190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15694672..15694926 | 788..1044 | 99 | | Plus |
| arm_X | 15693707..15693754 | 17..64 | 100 | -> | Plus |
| arm_X | 15693826..15694070 | 65..309 | 100 | -> | Plus |
| arm_X | 15694129..15694606 | 310..787 | 100 | -> | Plus |
BO24190.pep Sequence
Translation from 16 to 1060
> BO24190.pep
MSCFGCGRKYGLFCKEYGCPNCGYSFCSKCLKRPMPVPRHAGKVHNVCLI
CYDKLSKLQASADAEKVIDCDALPGILVTKMNLAPPSKSSDGADALFNDS
LPVEELPQALVPSSSSSPHSKDHKDHIDENLDSELTKRMQDYKRVDATDD
EIRTRLANLTGMPHTKSYDKKDLLLSTDQRNDQEKMRDLLAQFVDEAQLD
QNISRQRDDSISDIERRLRALRDTPVDSDACPSRSQMESIADNEEDDETL
LQNILKKYVAESRLPEPSESEISPINTESPGNTEELPWCNICNEDADFRC
HGCGGELFCTLCYKECHDDDEEYRAHVKEKYSAPPKLKENHFASFLDH
BO24190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15602-PB | 342 | CG15602-PB | 1..342 | 1..342 | 1844 | 100 | Plus |
| CG15602-PA | 342 | CG15602-PA | 1..342 | 1..342 | 1844 | 100 | Plus |
