BO24264.complete Sequence
859 bp assembled on 2010-05-05
GenBank Submission: KX795597
> BO24264.complete
GAAGTTATCAGTCGACATGAATACCTACGACGAAGTCTTGGCAACAGTGC
TGGACAATTTGCTGGCATCCAAGAACTGTGAGGTGGTCGACGACGTACTG
CGTCAGTCGATGCTGGAACTTTTGCGTGGCAAATTCCGTGAGATTGCACG
TCAGACTACCAATTGGTCCAATCACGCTGGTCGCTGTGCACCCAGCTACT
TCGATCTGGAGCGCACCTTCATCCGGATGAACATCAAGGTGGGCGAGCTA
AAGGCCATGTACGAGGGTCAACCGGATTCGTTGGTCTTGGTTGAGTGCAA
TGCACCGGAGACACAAGACCAGGACTTCCACAGTGTGCCGCAACCCGTGC
TGAGCTCCACAAAGGCCGTGGAATTGGCCTCCACCACGTATATTCCGGAC
CATTTGCCACCATTTCCAGGGGCGCACACCTATAAGAGTTCGACCATTGA
GAAGGTTACGGATCGCAGCTATGTGGCCATGAGGAATCGCCATGCCGAGA
ATGAGCTGAACACCCAAAACGCCTTAAATCAATACTACCTGAGGTGCAAC
CCCAATATATCGCTGTTCGAAGAAACCCAACGCGATGGAAGTGGCCACGT
TTTGGATCTAGGTCCACCCAAGAAACTTCCTTATTCGGACGCCCTGATGC
CAAGAAATCAGGTCTTTGATACGGACATCTATGCTCCCATCGAGGTGATA
ACCCACAAAGCCCTCGACTGCCGTTACTTGGAGAAGCCCAAGTTGCACAG
TTCACGCCCATCCTCAGGAAATTTCGAAGAGGAAGACGTGGAAATGGAGG
AGCCCTGCAGTCCAGGGGGACTAGGTATTGAAAAACCGAATGCAAGCTTT
CTAGACCAT
BO24264.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sa-RA | 828 | CG11308-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sa-RA | 956 | CG11308-RA | 43..867 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21405940..21406518 | 710..132 | 2895 | 100 | Minus |
| 3L | 28110227 | 3L | 21405514..21405646 | 841..709 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 21406582..21406696 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:22:07 has no hits.
BO24264.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:07 Download gff for
BO24264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 1..825 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:39 Download gff for
BO24264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 43..867 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:45 Download gff for
BO24264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 43..867 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:45 Download gff for
BO24264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21405512..21405644 | 711..843 | 98 | <- | Minus |
| 3L | 21405940..21406518 | 132..710 | 100 | <- | Minus |
| 3L | 21406582..21406696 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:39 Download gff for
BO24264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21398612..21398744 | 711..843 | 98 | <- | Minus |
| arm_3L | 21399040..21399618 | 132..710 | 100 | <- | Minus |
| arm_3L | 21399682..21399796 | 17..131 | 100 | | Minus |
BO24264.pep Sequence
Translation from 16 to 859
> BO24264.pep
MNTYDEVLATVLDNLLASKNCEVVDDVLRQSMLELLRGKFREIARQTTNW
SNHAGRCAPSYFDLERTFIRMNIKVGELKAMYEGQPDSLVLVECNAPETQ
DQDFHSVPQPVLSSTKAVELASTTYIPDHLPPFPGAHTYKSSTIEKVTDR
SYVAMRNRHAENELNTQNALNQYYLRCNPNISLFEETQRDGSGHVLDLGP
PKKLPYSDALMPRNQVFDTDIYAPIEVITHKALDCRYLEKPKLHSSRPSS
GNFEEEDVEMEEPCSPGGLGIEKPNASFLDH
BO24264.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sa-PA | 275 | CG11308-PA | 1..275 | 1..275 | 1455 | 100 | Plus |
