Clone BO24273 Report

Search the DGRC for BO24273

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:242
Well:73
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO24273.pep: Imported from assembly
Sequenced Size:547

Clone Sequence Records

BO24273.complete Sequence

547 bp assembled on 2010-05-05

> BO24273.complete
GAAGTTATCAGTCGACATGACCATTCTACTTCGTACTCCCAGAGCGGTGG
AGCTTTGGAAGTGGAGTAATGGCAATTACTCTCTATCAAGCAGGCTGATA
GATGGGCAGGTGGAGCAAATGGCTCTTAGTCAAGGAGGTGCTGGCATAGA
GAGCGGATATGTGGCGCTGATGGCTTCATCGCCAGCAGCAGAGATTCGGA
TTTACAGCTTCGGCAGCCCAGACACGAGCAGCTTCCAACTGGACCAAGTC
CTGGAGCTCGAGGACTCCCAACAGTCGCGGGTAATGCGCTTTATGCACCT
GCCCGAGTCCGACGATCTACTGCTCTGTGTGTCCAACGTACTGCCGCAGC
AACCGCTTCGCATCTACCAGCACCGCGGAGCAGCGGGATTCCAGCAAATC
CTCGGCGACAGCGCCTTGCCAAAGGCTCATGCCCTGGAGGTGCTCTATCT
GCCCAGCCATAAGCTGCGACTGCTGTCCATGGCCACGGAGGAGTCGGTCT
ACTTGCTGCAGCCACAGTTTACTACACTTGCAAGCTTTCTAGACCAT

BO24273.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
clos-RD 5511 CG42600-PD 4996..5508 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
clos-RD 5621 CG42600-RD 5053..5565 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9588009..9588337 529..201 1630 99.7 Minus
2R 25286936 2R 9588391..9588581 207..17 955 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:22:26 has no hits.

BO24273.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 11:43:10 Download gff for BO24273.complete
Subject Subject Range Query Range Percent Splice Strand
CG12928-RB 225..737 17..531 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:47 Download gff for BO24273.complete
Subject Subject Range Query Range Percent Splice Strand
clos-RD 5053..5565 17..531 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:51 Download gff for BO24273.complete
Subject Subject Range Query Range Percent Splice Strand
clos-RD 5053..5565 17..531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:51 Download gff for BO24273.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9588007..9588330 208..531 99 <- Minus
2R 9588391..9588581 17..207 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:47 Download gff for BO24273.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5475512..5475835 208..531 99 <- Minus
arm_2R 5475896..5476086 17..207 100   Minus

BO24273.pep Sequence

Translation from 16 to 547

> BO24273.pep
MTILLRTPRAVELWKWSNGNYSLSSRLIDGQVEQMALSQGGAGIESGYVA
LMASSPAAEIRIYSFGSPDTSSFQLDQVLELEDSQQSRVMRFMHLPESDD
LLLCVSNVLPQQPLRIYQHRGAAGFQQILGDSALPKAHALEVLYLPSHKL
RLLSMATEESVYLLQPQFTTLASFLDH

BO24273.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
clos-PD 1836 CG42600-PD 1666..1836 1..171 862 100 Plus