BO24337.complete Sequence
1603 bp assembled on 2010-06-24
GenBank Submission: KX798001
> BO24337.complete
GAAGTTATCAGTCGACATGTCTGGCGGAACGCAAGGGATTCGCAAGCTGG
CGGATAAGCTATTCACACCCAACGAAATTAGACGTTTCCAGGCATACAAG
AACCGCCTCAGTGAAAAGTATTTGACCGTGGAGGGCTTAAAGTCCACCTT
CAAGAGACCGGATTTGGGAAAACTATTCAACCGTCGCGTGTTTTCATCAA
ACAAAGAAGATTGCCCCGAAGAGCCAAAAGTTAAGGAATGTGACCCCAGC
TGGGATGAGCTGTATCCTCCAGGCCCGCCATACGAGCCCTATGACACACA
CTACTGGTATCCAGATCCCGAGTTCATGAATAAACAACAGTATATAGTTT
GGTATCCCGAAGGTGACGAGTGGAAAAAGCGTCCCAATTTTAAGGGAAAA
CAGATTCCACCCGTTGATCGTACATTTCGCACCAAGCTCATAAACTTTGG
ACCCGCGCATCCGGCGGCACACGGAGTACTCCGCATGATCCTCGAGCTGG
ATAATGAAACGGTGCTGAATGCCGATCCGCACATTGGGCTACTGCATCGC
GGAACCGAGAAACTGATCGAGTACAAGACGTACACTCAAGCACTGCCCTA
TTTCGATCGTCTGGACTATGTGTCCTGCATGGCCAATGAGTTGGCCTACT
GCTTGGCGGTGGAGAAGTTGCTGAATGTGGAGGTTCCACGCCGGGCCAAG
TACATACGCACCATGTTTTCGGAGATAATGAGGCTGACGAATCACACGAT
GGCCATTGGTTCGTCGGTACTGGACTGTGGAGCTATAACTCCACTCTTTT
GGCTGTTCGAGGAACGTGAGAAGTTGTATGAGTTTTCGGAACGCGCTTCG
GGAGCTCGTCTCCATGCCGCCTACATTCGACCGGGGGGCGTGGCCAGTGA
TATACCTCTAGGGTTTCTCCACGATTTGTATCAGTTTATCAATCAATTCA
ACGAACGATTGGACGAAGTGGAGGACGTAGTGACCGATAATCGCATCTGG
CGTATGCGTAATATTGGCATTGGAGTCATATCCGCACACGATGCCTTAAA
CTATGGATGCACTGGACCCGTTCTGAGGGCCACCGGCGTAAAGTGGGATT
TGCGTAAGCAACAGCCATACGATGCCTATGACGAGATGGATTTTGACGTG
GTTGTGGGATCGAATGGAGACTGCTACGATCGCTACTTGGTGCGCATGCG
AGAAATGCGCGAGTCGGTGAATATCATCAAGCAATGCATCGACGCCATGC
CACCGGGTGAGATCAAGGTGGATGATCTGAAGATCTGCCCTCCGCAACGA
AGCAAGATGAAGGAGGGCATGGAGGATCTGATCCATCATTTCAAGCACTT
CTCGCAAGGATTCCGGGTGCCTCCGGGACAGACGTACTGTGCCGTTGAAT
CGCCCAAGGGTGAATTCGGAGCATTCCTCATCTCCGATGGTTCATCGCGT
CCCTATCGCTGCAAGATTCGTCCAGCTTCCTATGCTCATCTAGCCCTCAT
GGCCAAAATGGCACCCGCACACCTGCTGGCCGATGTTGTGGCCATTATTG
GATCGCTGGACATCGTTTTTGGTGAAATCGACCGTGCAAGCTTTCTAGAC
CAT
BO24337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11913-RB | 1572 | CG11913-PB | 1..1569 | 17..1585 | 7845 | 100 | Plus |
| CG1970-RB | 1407 | CG1970-PB | 277..437 | 458..618 | 250 | 77 | Plus |
| CG1970-RA | 1407 | CG1970-PA | 277..437 | 458..618 | 250 | 77 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11913-RB | 1700 | CG11913-RB | 23..1592 | 16..1585 | 7850 | 100 | Plus |
| CG1970-RB | 1584 | CG1970-RB | 383..543 | 458..618 | 250 | 77 | Plus |
| CG1970-RA | 1573 | CG1970-RA | 372..532 | 458..618 | 250 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25358548..25359926 | 207..1585 | 6895 | 100 | Plus |
| 3R | 32079331 | 3R | 25358307..25358500 | 16..209 | 970 | 100 | Plus |
| 4 | 1348131 | 4 | 570067..570165 | 618..520 | 240 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:53:53 has no hits.
BO24337.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 11:46:18 Download gff for
BO24337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11913-RB | 24..1592 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:47 Download gff for
BO24337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11913-RB | 24..1592 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:59:53 Download gff for
BO24337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11913-RB | 24..1592 | 17..1587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:59:53 Download gff for
BO24337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25358308..25358500 | 17..209 | 100 | -> | Plus |
| 3R | 25358551..25359926 | 210..1587 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:47 Download gff for
BO24337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21184030..21184222 | 17..209 | 100 | -> | Plus |
| arm_3R | 21184273..21185648 | 210..1587 | 99 | | Plus |
BO24337.pep Sequence
Translation from 16 to 1603
> BO24337.pep
MSGGTQGIRKLADKLFTPNEIRRFQAYKNRLSEKYLTVEGLKSTFKRPDL
GKLFNRRVFSSNKEDCPEEPKVKECDPSWDELYPPGPPYEPYDTHYWYPD
PEFMNKQQYIVWYPEGDEWKKRPNFKGKQIPPVDRTFRTKLINFGPAHPA
AHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD
YVSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNHTMAIGSS
VLDCGAITPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVASDIPLGF
LHDLYQFINQFNERLDEVEDVVTDNRIWRMRNIGIGVISAHDALNYGCTG
PVLRATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVRMREMRES
VNIIKQCIDAMPPGEIKVDDLKICPPQRSKMKEGMEDLIHHFKHFSQGFR
VPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKIRPASYAHLALMAKMAP
AHLLADVVAIIGSLDIVFGEIDRASFLDH
BO24337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11913-PB | 523 | CG11913-PB | 1..523 | 1..523 | 2817 | 100 | Plus |
| CG1970-PB | 468 | CG1970-PB | 42..468 | 97..523 | 1537 | 65.5 | Plus |
| CG1970-PA | 468 | CG1970-PA | 42..468 | 97..523 | 1537 | 65.5 | Plus |
