BO24339.complete Sequence
946 bp assembled on 2010-05-18
GenBank Submission: KX794818
> BO24339.complete
GAAGTTATCAGTCGACATGGCCAAGCCCCACTCGGATGCGGATGCCTCTG
GCCTGGGCTACGCCTACCAGCTGCCGTCCGGCGGCCTCCTGCTGCGCCTC
AAATCTTCCCTCTCACAGTTCAGCGATTTGTTCAGCGACTTCAGCAGGTA
CATCTCGCCCGCCTATCATCACGATCGCTGCGAGCGATCCGTCCATATGC
GACTCTACTCGATGCACAAGCGCGAGTTTGTCATGGTCTTCCTGGGATTC
TTCACCTGCTTCGGTCTGGGCATAGTCATCGGGCTGACGGGACCGCCCAT
AACCAGCACATCATCGCTGACCGCCCAGCAGATTCTGGCGAACACCTCGC
TGGCGCATAGCCCAACGGTCCTGGGGAAGGGACCCTTCGCCATGAAGTCG
CCGCTGACCACCACATATTCGCAGCAAATGTGGCTGATAGCCAAGCTGGT
GACGGACAACAATGATGACGAGCGGTACGACAAGAGTTTCCAAGTGAGCG
TCTCAATCGATGGCATAAACGAGCAGCACAAGCCCCAAAGTGTCCTCGGA
TCCGGAGTGGCTCACAACCGGACGCGGCACTTGGTCTGCGTACGGAACGA
CTGCGAGGAGTTCACGGTGATGCATCTGGGATTCCTCGACTATGCCCACT
ATATTATCACTGTGCGCTTTTACGGCTTGGAGTCATTCCATCAGAAGTAT
AATATACGCAGCATAACATTTTACTTCAAGACTTACAGTCCGGACTTCAC
GCAGATTGAAATCTGGTTTAGGTGCATCTTTCTGCTGTTCACCTTCATTG
TCATATGCTGGTATGCCCACACCTTGCGCAAGTATCCAATCTATGATTGG
TCCATTGAGCAGCGATGGTTGTCGGTACTCCTGCCCCTGCTCCTTTTGTA
CGACAGTAGGTGTTTCACCCGGATTAGTGCAAGCTTTCTAGACCAT
BO24339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13409-RA | 1644 | CG13409-PA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13409-RA | 2087 | CG13409-RA | 177..1066 | 16..905 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22031273..22031724 | 467..16 | 2260 | 100 | Minus |
| 3R | 32079331 | 3R | 22030950..22031207 | 724..467 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 22030618..22030740 | 928..806 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 22030816..22030896 | 805..725 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:42:40 has no hits.
BO24339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:21 Download gff for
BO24339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RB | 188..1099 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:39 Download gff for
BO24339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 178..1066 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:32 Download gff for
BO24339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 178..1066 | 17..905 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:32 Download gff for
BO24339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22030614..22030740 | 806..930 | 98 | <- | Minus |
| 3R | 22030816..22030896 | 725..805 | 100 | <- | Minus |
| 3R | 22030950..22031206 | 468..724 | 100 | <- | Minus |
| 3R | 22031273..22031723 | 17..467 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:39 Download gff for
BO24339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17856336..17856462 | 806..930 | 98 | <- | Minus |
| arm_3R | 17856538..17856618 | 725..805 | 100 | <- | Minus |
| arm_3R | 17856672..17856928 | 468..724 | 100 | <- | Minus |
| arm_3R | 17856995..17857445 | 17..467 | 100 | | Minus |
BO24339.pep Sequence
Translation from 16 to 946
> BO24339.pep
MAKPHSDADASGLGYAYQLPSGGLLLRLKSSLSQFSDLFSDFSRYISPAY
HHDRCERSVHMRLYSMHKREFVMVFLGFFTCFGLGIVIGLTGPPITSTSS
LTAQQILANTSLAHSPTVLGKGPFAMKSPLTTTYSQQMWLIAKLVTDNND
DERYDKSFQVSVSIDGINEQHKPQSVLGSGVAHNRTRHLVCVRNDCEEFT
VMHLGFLDYAHYIITVRFYGLESFHQKYNIRSITFYFKTYSPDFTQIEIW
FRCIFLLFTFIVICWYAHTLRKYPIYDWSIEQRWLSVLLPLLLLYDSRCF
TRISASFLDH
BO24339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13409-PA | 547 | CG13409-PA | 1..303 | 1..303 | 1583 | 98.3 | Plus |
