BO24341.complete Sequence
1624 bp assembled on 2010-06-24
GenBank Submission: KX798339
> BO24341.complete
GAAGTTATCAGTCGACATGGAGATGCAGCTGCAGTGGAAATGTTGGATGT
TGATCTTCCTGATCGGTCTGCTGGAATTTGGAGCTGGCTCCCGAATACTC
TTCATGGGTCCATTTCCAGCTCCAAGTCATTGGCTCTGGCTGGAGCACTT
CCAGAACGATCTTCTGCGTCAAGGACATCATGTGACCAGTGTGAATAACC
ATCCCACCAAGCATCCCCACGAAAATCTGACGGAGATTATCATTAGTCCC
TCTTTTGACATACCCAAACACTTTCCGAAGGAGAACATATTTTCGATGCA
GTTTGTTAGCGATTTCAACAACCTAGAGCTCTGGTGGACCATTGGACTAA
TGACCACGGAGCACGCTTTCAAGGATCCCAAAGTGAAGAAGCTGATTGAG
AGCAAAGATGATCACTATGACTTGGTCATCATAGAGCAGTTTTTCCATGA
GGCCTTCCTGATGTTCGGCAAGAGGTTCAATTGTCCAGTGGTCACAATTG
GCACCATGGGTTATGCTGATAATATAGATCACGCAATGGGCATTCTGACG
CCTTGGTCCTTGATTCCCCATCTTCTGCTTTCCCATACAGATCGTATGAC
CTTTGGCCAGCGAGCTTATAATGCCTACTTATCTCTGTACGATGCGGTCA
TGAGACGATGGGTGTACCTGCCCAAAATGCAAAAATTGGCAGAAAAGTAT
TTCCAGGGATCAATTGAAGGACCTCTACCTAATGTTCTTGACTTGGAGCG
AAATATTTCCCTAGTCCTGATTAATGCTCACCGTAGTATCGATCTTCCGA
GGCCAAGTATGCCCGGACTCATTGACGTGGGTGGGGCGCACATTCAGAAG
CCCAAACAACTGCCCACTGACCTCCAGAATTTCCTGGATAATGCCACCTA
CGGAGTGATCTACTTCAGCATGGGCTCCTATGTAAAGAGCACTGATTTAC
CACAGGAGAAAACGGCGCTGATTCTCAAGGCATTCGGCCAACTCAAGCAG
CAAGTGATTTGGAAGTTCGAGAACGATTCCATTGGTGATCTGCCCTCGAA
TGTGATGATCAAGAAATGGATGCCCCAGAACGACATTTTGGCCCATCCGA
ATGTCAAGCTCTTCATCACGCACGGCGGTATTTTTGGAACCCAGGAGGGT
ATTTACTGGGGTGTTCCGATGCTGTGCGTACCCCTGTACGGGGATCAGCA
CCGGAACACTATTAAATCGGTGAGGGAGGGCTATGCCCGATCGCTGGTGT
TCTCCAAACTCACCACTGATGACTTGGTGCGGAATATCGAGACTCTGATC
AACGATCCCCAGTACAAGCGCAGTGCTCTGGAGGTATCGCAGCGATTCCG
CGATAATCCCATACATCCGCTGGACGAGGCCACCTTCTGGATCGAGTACA
TAATCCGGCATCGTGGGGCGCGGCATCTGAAGTCCCACGGCGCCTTCATC
CCCCTGCATCAGTATCTGCTCCTCGACGTCTTGGGTTGCCTGTTGCTGGG
CGCATTTCTTGCCATCTGGCTGCCATGGCGGATGATCAGGAGGGTGCACA
AGTGGTGGCTCAAAGGGGAATCCTCTAACAAACTGAACGAGGGCAAGAAG
CGATTGGCAAGCTTTCTAGACCAT
BO24341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10178-RB | 1593 | CG10178-PB | 1..1590 | 17..1606 | 7950 | 100 | Plus |
| CG10178-RA | 1593 | CG10178-PA | 1..1590 | 17..1606 | 7950 | 100 | Plus |
| CG15661-RB | 1593 | CG15661-PB | 1057..1207 | 1052..1202 | 185 | 74.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10178-RB | 1915 | CG10178-RB | 148..1737 | 17..1606 | 7950 | 100 | Plus |
| CG10178-RA | 1956 | CG10178-RA | 220..1809 | 17..1606 | 7950 | 100 | Plus |
| CG15661-RB | 1899 | CG15661-RB | 1279..1429 | 1052..1202 | 185 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18512445..18513334 | 717..1606 | 4450 | 100 | Plus |
| 2L | 23513712 | 2L | 18511939..18512386 | 273..720 | 2240 | 100 | Plus |
| 2L | 23513712 | 2L | 18511623..18511878 | 17..272 | 1280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 2530..2575 | 121..166 | 113 | 71.7 | Plus |
BO24341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 11:46:15 Download gff for
BO24341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10178-RA | 208..1797 | 17..1608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:44 Download gff for
BO24341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10178-RA | 220..1809 | 17..1608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:59:52 Download gff for
BO24341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10178-RA | 220..1809 | 17..1608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:59:52 Download gff for
BO24341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18511623..18511878 | 17..272 | 100 | -> | Plus |
| 2L | 18511939..18512385 | 273..719 | 100 | -> | Plus |
| 2L | 18512448..18513334 | 720..1608 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:44 Download gff for
BO24341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18511623..18511878 | 17..272 | 100 | -> | Plus |
| arm_2L | 18511939..18512385 | 273..719 | 100 | -> | Plus |
| arm_2L | 18512448..18513334 | 720..1608 | 99 | | Plus |
BO24341.pep Sequence
Translation from 16 to 1624
> BO24341.pep
MEMQLQWKCWMLIFLIGLLEFGAGSRILFMGPFPAPSHWLWLEHFQNDLL
RQGHHVTSVNNHPTKHPHENLTEIIISPSFDIPKHFPKENIFSMQFVSDF
NNLELWWTIGLMTTEHAFKDPKVKKLIESKDDHYDLVIIEQFFHEAFLMF
GKRFNCPVVTIGTMGYADNIDHAMGILTPWSLIPHLLLSHTDRMTFGQRA
YNAYLSLYDAVMRRWVYLPKMQKLAEKYFQGSIEGPLPNVLDLERNISLV
LINAHRSIDLPRPSMPGLIDVGGAHIQKPKQLPTDLQNFLDNATYGVIYF
SMGSYVKSTDLPQEKTALILKAFGQLKQQVIWKFENDSIGDLPSNVMIKK
WMPQNDILAHPNVKLFITHGGIFGTQEGIYWGVPMLCVPLYGDQHRNTIK
SVREGYARSLVFSKLTTDDLVRNIETLINDPQYKRSALEVSQRFRDNPIH
PLDEATFWIEYIIRHRGARHLKSHGAFIPLHQYLLLDVLGCLLLGAFLAI
WLPWRMIRRVHKWWLKGESSNKLNEGKKRLASFLDH
BO24341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10178-PB | 530 | CG10178-PB | 1..530 | 1..530 | 2863 | 100 | Plus |
| CG10178-PA | 530 | CG10178-PA | 1..530 | 1..530 | 2863 | 100 | Plus |
| CG15661-PB | 530 | CG15661-PB | 15..522 | 15..512 | 1088 | 42.8 | Plus |
| CG15661-PA | 530 | CG15661-PA | 15..522 | 15..512 | 1088 | 42.8 | Plus |
| CG4302-PA | 532 | CG4302-PA | 9..519 | 13..512 | 1005 | 40.4 | Plus |
