BO24349.complete Sequence
1264 bp assembled on 2010-05-18
GenBank Submission: KX796478
> BO24349.complete
GAAGTTATCAGTCGACATGAGCCACCGCTGTGAGATCCAATTGGACAACC
CACGGGGGGTCTATAGGGCCGGCGATACGGTCAATGGTCACGTCTATCTG
ACCCTTTCGGAGCGGGCCCTAATCAAAGCAATATGCCTGGAGGCCAATGG
ATATGCGAGCACTGCCTGGCAGCAGCCCCAAAAGCACAAGAATCAAAAAA
AGAACGAGCAGCCAGTGGTGGTTCAGAGTTTGGACTTTGATTATCGCGTG
GATTATTTTGCCAAAATCGATTATTTTGTGGGCTCGGAGGCCGCACAGCC
ACAGATAATGGAGGCGGGCACCTACAATTACGGTTTCCATGTGAAGCTGC
CCAAGAACTGTCCGGGGAATTTCGAGGGGGGCCACGGACACATACGGTAC
ACACTCCAAGTACTCATCCACAGCAGTGCAGATCGTCCGCTGGAGGTGCT
CCATGTACGCCAGCTGCAGATTTTCCCGCAGAACTCTCTGAGCCAGGAGA
CGCGGAGCTGTGAGATCCAGATCTATGAGCAGACTCCTCGCCTTAGATTC
TGGATGAAGCCACTTCATCTGCAGCTCCAGATTCCCAGGCAGGGTTATTC
GCCAGGAGCAGGTATTTCTGTTCACTTAAAGCTGCATAACCCGGAGAAAT
TGACACTTCGCGAGGCGGTGTATTCCCTCGTTCAGATCAGCACTTACGTT
GCCCATCTAAAGAATAAGCCCAAACGCTTGGAGACCAAGGTGGAGCGACA
AACTGTCCTAAGCAGCCGCCACGAGCTCCACAACCTCCCCCGTGGAGAAC
TGCAGAATTTTCAGCATCTTCACATGCTGCAAGTGCCACAAACAGCGGCC
ACATTGACTGTGGCAGGATGTGCCTGCCTGCAGCTCAACTACGAGGTGGA
GGTGCTGGTCACAACTCAGCAGGAAAAGCGCTTAATTGCGGCCCGGATGC
CGGTCATCATTGGAAATGTGACGCCGCCCTGTCCTGGCAAACTCCTAATG
CAAGAACCCATTGATGGCACTGCTCCGGAACCAACTCCTCCAGTCGAAAC
AGCATCAACATTGATTCCGAATTTTAGCATTTCCACCACATCTTTGGCTT
CGAATTTCCGGGAAGCCGAGTTCATGGTAGCCACCAATCTGAATAAGACC
AACAAACATTACTTGTCCGGCGAACAGTTGGATTTTAGACCACGCTATGT
CTACTACGAAATGGACCAGACTCAATCGGAGGAAGTGAAGTCTCATGCAA
GCTTTCTAGACCAT
BO24349.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18744-RB | 1233 | CG18744-PB | 1..1230 | 17..1246 | 6135 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18744-RB | 1336 | CG18744-RB | 25..1254 | 17..1246 | 6135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7797371..7798341 | 1097..127 | 4840 | 99.9 | Minus |
| 3R | 32079331 | 3R | 7797160..7797309 | 1246..1097 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 7798636..7798747 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:43:19 has no hits.
BO24349.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:25 Download gff for
BO24349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18744-RB | 25..1254 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:54 Download gff for
BO24349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18744-RB | 25..1254 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:43 Download gff for
BO24349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18744-RB | 25..1254 | 17..1248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:43 Download gff for
BO24349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7797158..7797308 | 1098..1248 | 98 | <- | Minus |
| 3R | 7797371..7798339 | 129..1097 | 99 | <- | Minus |
| 3R | 7798636..7798747 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:54 Download gff for
BO24349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3622880..3623030 | 1098..1248 | 98 | <- | Minus |
| arm_3R | 3623093..3624061 | 129..1097 | 99 | <- | Minus |
| arm_3R | 3624358..3624469 | 17..128 | 100 | | Minus |
BO24349.pep Sequence
Translation from 16 to 1264
> BO24349.pep
MSHRCEIQLDNPRGVYRAGDTVNGHVYLTLSERALIKAICLEANGYASTA
WQQPQKHKNQKKNEQPVVVQSLDFDYRVDYFAKIDYFVGSEAAQPQIMEA
GTYNYGFHVKLPKNCPGNFEGGHGHIRYTLQVLIHSSADRPLEVLHVRQL
QIFPQNSLSQETRSCEIQIYEQTPRLRFWMKPLHLQLQIPRQGYSPGAGI
SVHLKLHNPEKLTLREAVYSLVQISTYVAHLKNKPKRLETKVERQTVLSS
RHELHNLPRGELQNFQHLHMLQVPQTAATLTVAGCACLQLNYEVEVLVTT
QQEKRLIAARMPVIIGNVTPPCPGKLLMQEPIDGTAPEPTPPVETASTLI
PNFSISTTSLASNFREAEFMVATNLNKTNKHYLSGEQLDFRPRYVYYEMD
QTQSEEVKSHASFLDH
BO24349.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18744-PB | 410 | CG18744-PB | 1..410 | 1..410 | 2157 | 100 | Plus |
| CG18748-PC | 409 | CG18748-PC | 5..402 | 5..411 | 306 | 26 | Plus |
| CG18745-PA | 433 | CG18745-PA | 1..368 | 1..379 | 301 | 27.3 | Plus |
| CG10086-PA | 469 | CG10086-PA | 1..309 | 1..318 | 279 | 28.7 | Plus |
| CG18747-PB | 418 | CG18747-PB | 5..395 | 5..399 | 267 | 25.8 | Plus |
