BO24351.complete Sequence
1474 bp assembled on 2010-05-18
GenBank Submission: KX797099
> BO24351.complete
GAAGTTATCAGTCGACATGTCGAAAAAGTGCTCCGTGCGATCGCTGAGCG
ACAGCGCCTTGGCGGAGCTGGCCAATCTCTTGGTGTCCACCATCAGCTAC
GCGCAGTATGCCCCGGACGTGCAGCTGGACATTAACATCGTCATGGTGGA
ACTGAACGAGTATCTGGCCCAGCTGGGAGCAACCCCCAATATATACCAGG
ATCTGCTCAGGGTGATCCTCAGCTCGGACTATCTGGACGCCAACATGCGG
TTCACCTGCCTGCAGATGCTGCTCAACTGTGGCGTTACTTTCCTGATGAC
CGAGGTGTTTCCCTTCAGCTACTACGAGAAGATCCTGCAGGTGATTGCAG
CCCAAGGCGCAGGACTGAGAGTGCTGAATATCAAGGGAATCTGGGTCAAG
GAGGAGCACATGCACTACATGTACGACATAGTGAGGAAATGCAAGCAGCT
GGTCAAGTTGTATGTGCCCTATATTGCCAACGATCGGCTGCTGGAGGAGA
TCGGTAACTGCTGCACCCGTCTGCAGATCCTGGACATTTCCGGCGAGACC
GACATCACGGAAATCGGCATCGATCTGCTGGCCAAGGGCGTGTGCTCACA
ATCACTAACCGTTGTGGATGTGGGCATGCCGGGCGAGGAGAACATCTGCT
ACTCGGACATTGCCCTCATCCTGGAGCACTGTCCCCAGGTAGAGACCCTC
TCCACTTACTCCTTTGTCGGCGCCTCCCTGAAGTTTATTCACGACAATGT
CGACGATCGCTTCAAGTGCCGACTGAAGTACATCCACGACACGGGCACGG
ATGAAGCCACCTTGCAGGTGATCATGCAGACGTGCCCCAGGCTGGAGACC
CTTTATCTGGACTCGCCCAAGACGGGTAGCCTGAGGGCTCTTAGTACTCG
CAATTTGCGCAAATTGAAGATCTACAAATTTGTGGTGGCCGAGCTACTGC
CCCTGCTGGAGCGTCCGATTGGCAGGAATCTGCGTCATCTCACCATGATC
AAGGGACTGGGGAACCTTGAGCTGGGCAAGCTGGCTCGCCTGTGTCCCTC
GCTCATTGATCTCGACTGCTATATGATCGACAGTCTGTCCTACGGAGCCG
GACACGCCAAGTTCCAGCAACTGGAGGGTCTGGAGATTCTGAGCAGCGCC
ATTCTGACCAGTTCTTTGAAGGCCTTCCTCTGCAATTCCACCGATCTGAA
GAGACTGGCGGTGGACACGGTGGAGTTCACCGACGATGATATTATGAGCA
TGTTTATGCAGCACGATTTCAAAGTTTTGGAGGATGTGTGGTTCACTCTA
GCGCCAGAGCTCACAGTGCAGTCTGTGGAGTTATTAATGGACAGCTGCCC
GGAACTGCAGTCCGTGGGTCAACTGAACGGCTGGTCGCTGACGCCCGATG
ATTTGGCGCTGATTCGTGGACTCCTCAAAAGCGGCAATTCGAGCATTCGC
CTTCAAGCAAGCTTTCTAGACCAT
BO24351.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15412-RB | 1443 | CG15412-PB | 1..1440 | 17..1456 | 7185 | 99.9 | Plus |
| CG15412-RC | 1461 | CG15412-PC | 1..1431 | 17..1447 | 7140 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15412-RB | 1859 | CG15412-RB | 301..1743 | 14..1456 | 7200 | 99.9 | Plus |
| CG15412-RC | 1889 | CG15412-RC | 301..1734 | 14..1447 | 7155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3374121..3375031 | 1248..338 | 4540 | 99.9 | Minus |
| 2L | 23513712 | 2L | 3375083..3375411 | 342..14 | 1645 | 100 | Minus |
| 2L | 23513712 | 2L | 3373811..3373929 | 1447..1329 | 595 | 100 | Minus |
| 2L | 23513712 | 2L | 3373984..3374067 | 1330..1247 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:43:31 has no hits.
BO24351.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:26 Download gff for
BO24351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15412-RB | 304..1743 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:58 Download gff for
BO24351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15412-RB | 304..1743 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:47 Download gff for
BO24351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15412-RB | 304..1743 | 17..1458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:47 Download gff for
BO24351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3373811..3373927 | 1331..1447 | 100 | <- | Minus |
| 2L | 3373984..3374065 | 1249..1330 | 100 | <- | Minus |
| 2L | 3374121..3375028 | 341..1248 | 99 | <- | Minus |
| 2L | 3375085..3375408 | 17..340 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:58 Download gff for
BO24351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3373811..3373927 | 1331..1447 | 100 | <- | Minus |
| arm_2L | 3373984..3374065 | 1249..1330 | 100 | <- | Minus |
| arm_2L | 3374121..3375028 | 341..1248 | 99 | <- | Minus |
| arm_2L | 3375085..3375408 | 17..340 | 100 | | Minus |
BO24351.pep Sequence
Translation from 16 to 1474
> BO24351.pep
MSKKCSVRSLSDSALAELANLLVSTISYAQYAPDVQLDINIVMVELNEYL
AQLGATPNIYQDLLRVILSSDYLDANMRFTCLQMLLNCGVTFLMTEVFPF
SYYEKILQVIAAQGAGLRVLNIKGIWVKEEHMHYMYDIVRKCKQLVKLYV
PYIANDRLLEEIGNCCTRLQILDISGETDITEIGIDLLAKGVCSQSLTVV
DVGMPGEENICYSDIALILEHCPQVETLSTYSFVGASLKFIHDNVDDRFK
CRLKYIHDTGTDEATLQVIMQTCPRLETLYLDSPKTGSLRALSTRNLRKL
KIYKFVVAELLPLLERPIGRNLRHLTMIKGLGNLELGKLARLCPSLIDLD
CYMIDSLSYGAGHAKFQQLEGLEILSSAILTSSLKAFLCNSTDLKRLAVD
TVEFTDDDIMSMFMQHDFKVLEDVWFTLAPELTVQSVELLMDSCPELQSV
GQLNGWSLTPDDLALIRGLLKSGNSSIRLQASFLDH
BO24351.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15412-PB | 480 | CG15412-PB | 1..480 | 1..480 | 2451 | 100 | Plus |
| CG15412-PC | 486 | CG15412-PC | 1..479 | 1..479 | 2438 | 99.8 | Plus |
