BO24354.complete Sequence
1405 bp assembled on 2010-05-18
GenBank Submission: KX798058
> BO24354.complete
GAAGTTATCAGTCGACATGAGTGCCACCGCCTGGAAGCCAGAACCCTCCT
CCGAGGATAATGATGATGACCACAAGGAGTCAAAAAAAAAGCTGAAGAAG
GAGGGGGCAGGTGGATGGGCTTCGACCAGGCGATACGCCAGAATCCCCCT
TAAAATAATGGCCGCTCTGGCCACCGTGTATGTGAGCATTCTTTCCTCGG
AGCGGTACTTCTACTACTGGGTGCAGACCTCCATCGAAAGGACTGACATG
CATGTATCCGAGATCGATTTCCCAGCCGTGACCATCATTCCGATCAATTT
GAGCATCCTGAAAGCCGAGAAGCTCTCCAAGGCCTATAACTTGGTTCAGT
CCGTGGTCTGGCAAACACCGATGTCCGCCCGCCTCACGGATGAGAACTTC
ACGGAGTTCTCCGAACTGGAAAACTGGAACGCGCAGAGCTGGGGAATCTA
CCAGGCGCTGCAGATGAACTGCCAGCACTTCTTCACCGAGTGCCAGTGGC
GTCGCAAGGCGATGAACTGCTGTGACCTATTCCGACCCACCAAGACCTTC
AATGGCTTCGCCTTCGAGTTCAACTCACTGGTCTCCTCGGGAAGAGATGA
AACGTGGCCCTGGTCCGTGGCTTCATGCGGATCATATAGCGGACTCAATG
TGAAGATCAAACGGCAGCAGGGTCTGTATACGTTGAATACAATGGGGGTG
ATAGTGCACGAACCGACCCAGTTGCTGGGCATGAGCATTGACTATTCCTC
AGAGGATCGCATCGTGGTTCCGGTGGAACCACTTCATTTCACAGCCGAGT
TGGATGTCCGGGCACGTCCCGTTCAAATGCGTCGTTGTTACTTTGAGAAT
GAGATACCAACGGGAAAGTCCCGGTCGGAGTGCATCTACAAGTGCCACGT
CAACTACATCATCAGCAAGTGCAACTGCTCCTTGGAACTGCCGGTGAAGG
CCACTCAAGATGAGGACAACATTGCGGCTGCAAAGGAAAGCAACGGACGT
AGAATTTGCGGTGTGAAGGATCTGGCCTGCTTCAATCAGCACCGACTTTC
CCTCTTTTCCATGAGCAACATCATCGAAGAGTCCCGTGATAATGTGTTCT
CCACCGTGGATTGCGGTTGCTTTCCTCAGTGCGGTCACACCCAGTACCAC
ACGTCAACCTACACGGAGAAGATGAGCGCCCACACCAACCTTGCCGCAGC
GATCGAGATAGATGTGTACTTCCAGGAGGAGACCCTCTTCTCTTACCGCT
CCATGCTCCGCTTCACGCTGATCGACTTAATGGTTTCCTATGGAGGAATA
GCCGGTTTGATCATGGGCATCTCGGTGCTAGGTTGCATCAACGAACTCTT
GGATCGCTTCGCCTGTTGTCGCATACCCCATGGCTCCGCAAGCTTTCTAG
ACCAT
BO24354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk30-RB | 1374 | CG18110-PB | 1..1371 | 17..1387 | 6855 | 100 | Plus |
| ppk30-RA | 1374 | CG18110-PA | 1..1371 | 17..1387 | 6855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk30-RB | 1888 | CG18110-RB | 10..1380 | 17..1387 | 6855 | 100 | Plus |
| ppk30-RA | 1761 | CG18110-RA | 10..1380 | 17..1387 | 6855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29669377..29669946 | 132..701 | 2850 | 100 | Plus |
| 3R | 32079331 | 3R | 29670471..29670707 | 1047..1283 | 1185 | 100 | Plus |
| 3R | 32079331 | 3R | 29670208..29670408 | 846..1046 | 1005 | 100 | Plus |
| 3R | 32079331 | 3R | 29670006..29670156 | 697..847 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 29669158..29669273 | 17..132 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 29670765..29670869 | 1283..1387 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:44:03 has no hits.
BO24354.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:31 Download gff for
BO24354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18110-RA | 1..1371 | 17..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:08 Download gff for
BO24354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18110-RA | 10..1380 | 17..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:57 Download gff for
BO24354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk30-RA | 10..1380 | 17..1389 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:57 Download gff for
BO24354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29670471..29670707 | 1047..1283 | 100 | -> | Plus |
| 3R | 29670766..29670869 | 1284..1389 | 98 | | Plus |
| 3R | 29669158..29669273 | 17..132 | 100 | -> | Plus |
| 3R | 29669378..29669942 | 133..697 | 100 | -> | Plus |
| 3R | 29670007..29670156 | 698..847 | 100 | -> | Plus |
| 3R | 29670210..29670408 | 848..1046 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:08 Download gff for
BO24354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25494880..25494995 | 17..132 | 100 | -> | Plus |
| arm_3R | 25495100..25495664 | 133..697 | 100 | -> | Plus |
| arm_3R | 25495729..25495878 | 698..847 | 100 | -> | Plus |
| arm_3R | 25495932..25496130 | 848..1046 | 100 | -> | Plus |
| arm_3R | 25496193..25496429 | 1047..1283 | 100 | -> | Plus |
| arm_3R | 25496488..25496591 | 1284..1389 | 98 | | Plus |
BO24354.pep Sequence
Translation from 16 to 1405
> BO24354.pep
MSATAWKPEPSSEDNDDDHKESKKKLKKEGAGGWASTRRYARIPLKIMAA
LATVYVSILSSERYFYYWVQTSIERTDMHVSEIDFPAVTIIPINLSILKA
EKLSKAYNLVQSVVWQTPMSARLTDENFTEFSELENWNAQSWGIYQALQM
NCQHFFTECQWRRKAMNCCDLFRPTKTFNGFAFEFNSLVSSGRDETWPWS
VASCGSYSGLNVKIKRQQGLYTLNTMGVIVHEPTQLLGMSIDYSSEDRIV
VPVEPLHFTAELDVRARPVQMRRCYFENEIPTGKSRSECIYKCHVNYIIS
KCNCSLELPVKATQDEDNIAAAKESNGRRICGVKDLACFNQHRLSLFSMS
NIIEESRDNVFSTVDCGCFPQCGHTQYHTSTYTEKMSAHTNLAAAIEIDV
YFQEETLFSYRSMLRFTLIDLMVSYGGIAGLIMGISVLGCINELLDRFAC
CRIPHGSASFLDH
BO24354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk30-PB | 457 | CG18110-PB | 1..457 | 1..457 | 2434 | 100 | Plus |
| ppk30-PA | 457 | CG18110-PA | 1..457 | 1..457 | 2434 | 100 | Plus |
| ppk7-PA | 573 | CG9499-PA | 68..499 | 47..454 | 393 | 27.4 | Plus |
| ppk20-PB | 564 | CG7577-PB | 62..490 | 45..438 | 315 | 27.5 | Plus |
| ppk21-PB | 548 | CG12048-PB | 81..503 | 47..438 | 310 | 22.7 | Plus |
