BO24357.complete Sequence
1186 bp assembled on 2010-05-18
GenBank Submission: KX795853
> BO24357.complete
GAAGTTATCAGTCGACATGAAGTACTTGTGTTGGATCTTAGTGACCACGT
CAGTGCTAGGTCAATTCACCAAGCAACTTTACCGAAGCTTTTTGCAGGAT
AATAAACAATATAACATCATTGCCTCGCCTCTTTGCGTCGAGATTGGAAT
GAGCATGATCCTCATGGGAGCGGATGGAAATACAGCCAATGAACTGAGGA
CGGCTCTGAATCTGCCAGAGGATAAAAAGAATGTAGCTACTATATATGAT
AAGCTTTTGACTAAACTCGAAAGGGGCAAGAAGGTAGCCATTCTCCACTT
GGCGAATCGCTTGTTTGTCAACGAAACAATTGGTGTTAACAAGCGCTACA
ATAAACTAGTCAATAAGCACTTTAGGGCCGAGGCAGAAGCCATTAAGCTG
GCCGATCGATTGAAGGCAGCCTGGGCTATAAACGATTGGGTGCTCGACCA
GACACTAGATAATGTGAAAGACATTATAATACCCAGTGACTTGACGCCCG
ATGAAAGTGCGGTCATGATCAACGCAGCTTTCTTCAAGGGCTACTGGAAG
ACGCGATTCGATAAGATGAACACCAAGCCCAAGGTATTCTATGTATCCAA
AAGTTACCAAGTAAATGTCAATATGATGTCGCAAGTGGGTCGATTTAAGA
TGCGTACTTCGACCATAGACCAAATTATTGAGCTTCCATTTGCATACTCA
AACCTTTCAATGGTAATCGTTCTGCCCAAGGACAATGGGTCCCTAACTCA
GGCAGAAGCCACAATCGAAAGTTACCCTCAGATAGTTCTCACTGAAATGG
ATGTACATGTGCAGCTTCCTAAATTTAAAATCGATTTCCGCATGGAGCTC
GTCGAAACTCTTAAAAGCATGGGAATACAGGATCTCTTCAATAGTTCGTC
GGATATCAGCGTCCTACTGAACCAGTCTGGCACTAGAATCAGCCAAGTCG
TACACAAAGCCTTTATAGAGATTGACGAAGAAGGCGGGTCCGCAGGATCC
GCTTCTGCGAGCCCCATTCGAGGATTATCTGATTATGCGACTAGTGTGGT
TACTTTTACAGTCAATAGTCCCTTTGTCTTCATGATTCGCGATGATGACA
ACATATATTTCCGTGGCCGAGTCGTTGATCCTTTGAAGAAGAGCAATCCC
ATTGACCGTATAACCATAGCAAGCTTTCTAGACCAT
BO24357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28Da-RB | 1155 | CG31902-PB | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28Da-RB | 1270 | CG31902-RB | 17..1169 | 16..1168 | 5765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7888205..7889043 | 868..30 | 4195 | 100 | Minus |
| 2L | 23513712 | 2L | 7887988..7888150 | 1031..869 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 7887794..7887931 | 1168..1031 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:44:25 has no hits.
BO24357.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:35 Download gff for
BO24357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31902-RB | 18..1169 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:18 Download gff for
BO24357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28Da-RB | 18..1169 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:03 Download gff for
BO24357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28Da-RB | 18..1169 | 17..1170 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:03 Download gff for
BO24357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7887792..7887930 | 1032..1170 | 98 | <- | Minus |
| 2L | 7887988..7888150 | 869..1031 | 100 | <- | Minus |
| 2L | 7888205..7889043 | 30..868 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:18 Download gff for
BO24357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7887792..7887930 | 1032..1170 | 98 | <- | Minus |
| arm_2L | 7887988..7888150 | 869..1031 | 100 | <- | Minus |
| arm_2L | 7888205..7889043 | 30..868 | 100 | <- | Minus |
BO24357.pep Sequence
Translation from 16 to 1186
> BO24357.pep
MKYLCWILVTTSVLGQFTKQLYRSFLQDNKQYNIIASPLCVEIGMSMILM
GADGNTANELRTALNLPEDKKNVATIYDKLLTKLERGKKVAILHLANRLF
VNETIGVNKRYNKLVNKHFRAEAEAIKLADRLKAAWAINDWVLDQTLDNV
KDIIIPSDLTPDESAVMINAAFFKGYWKTRFDKMNTKPKVFYVSKSYQVN
VNMMSQVGRFKMRTSTIDQIIELPFAYSNLSMVIVLPKDNGSLTQAEATI
ESYPQIVLTEMDVHVQLPKFKIDFRMELVETLKSMGIQDLFNSSSDISVL
LNQSGTRISQVVHKAFIEIDEEGGSAGSASASPIRGLSDYATSVVTFTVN
SPFVFMIRDDDNIYFRGRVVDPLKKSNPIDRITIASFLDH
BO24357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28Da-PB | 384 | CG31902-PB | 1..384 | 1..384 | 1945 | 100 | Plus |
| Spn42Dd-PB | 372 | CG9456-PB | 1..372 | 1..372 | 743 | 42.3 | Plus |
| Spn38F-PA | 372 | CG9334-PA | 1..370 | 1..372 | 715 | 42.7 | Plus |
| Spn38F-PB | 370 | CG9334-PB | 1..368 | 1..372 | 709 | 42.1 | Plus |
| Spn28F-PA | 375 | CG8137-PA | 1..373 | 1..372 | 705 | 41.9 | Plus |
