BO24358.complete Sequence
949 bp assembled on 2010-05-18
GenBank Submission: KX795212
> BO24358.complete
GAAGTTATCAGTCGACATGCGAATACGTGGAGTATTGGCCATGTATCTGA
TGTTCCTCCGCCTGCTACTCCACTGCACCACCGGTCACACATTGCCTCAG
CGACACAGCCCCCAGCACAAGAGAATGATCGATCCCCGTGAGCTCTTAAA
CGATTTTGCTGCAATCAAGGAACCAGGAACCAGCGAAGTTGCTCCAAAGA
ATTCTGCTAGATCAATTGCTTTGTACAATGCTGGTGGAGCGATGTCAGGA
TCAGGAGAAGGAACCGCACCGGGACCGGGAACAGATAATTCCAAGTCGGC
CTCCAATAAGCAATGCGATCCGCAGGCAAAGTGCAATGTAAAGACGATCA
TAACCCCCGGAGATCCCAAGCAGAAATCCTCAATGATCGCAATGAAAGCT
GCACAGGATGCAAAGGCGGCCAGTGAAGCACAATCGGCCGCTGGCCAGGC
TGCTGCCCAACACATTAAGATGGAACTCGCTGAGAAGGCCTTTCAATCGG
CCAAGGCGGCCGAGGCTGCTCTGATGGGCAAACAGATGATGGTCGATCAA
CTGGAGCAGGAAGTCCAGGAAGCTAGTGCCGTTGTCGAGGAGGAGTCCAA
TTCGATCCACCACACGGAGGCCAATATGAATGCCGCCGTTGAAGCTGTCA
AAGTGGCCGTGCAGCAATTCGAAACCATCAATGAACTGCAGAAGACCGCC
AGGGAGTCACTGACCAATATTCAGACGGTGGCCATGGGATCGCAACAGGA
AATGGCCGCCAAGACACAGCTCCTGGAAGCGGCTCGCAACCGGATGGCCA
TGCTCCAAAAGCAACTGGTGAGTGCCCACGACGACTATGAGAAGACCAAG
CAGGCCGCCTACAAGGCTGCCTGTGCCGCCGTGGAAGCCAAACAGAGGGC
TGGACCACCTGTACCACGTTACTATATTTTTGCAAGCTTTCTAGACCAT
BO24358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34459-RC | 918 | CG34459-PC | 1..915 | 17..931 | 4575 | 100 | Plus |
| CG34459-RB | 918 | CG34459-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
| CG34459-RA | 918 | CG34459-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34459-RC | 1289 | CG34459-RC | 298..1213 | 16..931 | 4580 | 100 | Plus |
| CG34459-RB | 1096 | CG34459-RB | 105..1020 | 16..931 | 4580 | 100 | Plus |
| CG34459-RA | 1061 | CG34459-RA | 70..985 | 16..931 | 4580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16825735..16826572 | 94..931 | 4190 | 100 | Plus |
| 2R | 25286936 | 2R | 16825599..16825677 | 16..94 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 14260399..14260460 | 900..839 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:44:36 has no hits.
BO24358.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:37 Download gff for
BO24358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 69..983 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:22 Download gff for
BO24358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 69..983 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:06 Download gff for
BO24358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 71..985 | 17..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:06 Download gff for
BO24358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16825600..16825677 | 17..94 | 100 | -> | Plus |
| 2R | 16825736..16826572 | 95..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:22 Download gff for
BO24358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12713105..12713182 | 17..94 | 100 | -> | Plus |
| arm_2R | 12713241..12714077 | 95..933 | 99 | | Plus |
BO24358.pep Sequence
Translation from 16 to 949
> BO24358.pep
MRIRGVLAMYLMFLRLLLHCTTGHTLPQRHSPQHKRMIDPRELLNDFAAI
KEPGTSEVAPKNSARSIALYNAGGAMSGSGEGTAPGPGTDNSKSASNKQC
DPQAKCNVKTIITPGDPKQKSSMIAMKAAQDAKAASEAQSAAGQAAAQHI
KMELAEKAFQSAKAAEAALMGKQMMVDQLEQEVQEASAVVEEESNSIHHT
EANMNAAVEAVKVAVQQFETINELQKTARESLTNIQTVAMGSQQEMAAKT
QLLEAARNRMAMLQKQLVSAHDDYEKTKQAAYKAACAAVEAKQRAGPPVP
RYYIFASFLDH
BO24358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34459-PC | 305 | CG34459-PC | 1..305 | 1..305 | 1525 | 100 | Plus |
| CG34459-PB | 305 | CG34459-PB | 1..305 | 1..305 | 1525 | 100 | Plus |
| CG34459-PA | 305 | CG34459-PA | 1..305 | 1..305 | 1525 | 100 | Plus |
| CG14840-PA | 300 | CG14840-PA | 28..262 | 59..295 | 521 | 49.2 | Plus |
| CG14841-PA | 274 | CG14841-PA | 49..260 | 87..295 | 473 | 48.6 | Plus |
