BO24362.complete Sequence
1561 bp assembled on 2010-11-18
GenBank Submission: KX799286
> BO24362.complete
GAAGTTATCAGTCGACATGATGAATCTGCATCTGAGTGAAATCTTTTGGA
TCACGCTGATCTTGGTCCTCAGCATATGGACTTCAGTTGGGGTCAAAGCC
GAGGAAGAGGAATGTCCTTCAATGGCGGACGCGGGAAGCCTGCAACAGAC
CCAGCTAATCCAGCGATTAACACATGTCTGCCGCTATGATCGACTGGAAA
GACCATTTGAATACGACTCTGATGGAAAACGACTGCCCATTGTGGTGAAG
ACGCGTATTTATGTGTACTTCCTGCAGAACCTCAACTCCGACCTGCTGCA
GTTCAAGATGCACGCGCTGTTGCAGCTGCGATTTCAGGACAAGCGGCTGG
CTTACAAGGCCTTCAATCGCAGCGACAACATCCTGGGCCAGAAGCACCTG
AGCGAACGCCTCTGGCTGCCGCACATCTTCTTTGCCAACGAACGAGAGTC
CAGTATCCTGGGCACGGACGAGAAGGACGTCCTGACTTCGCTTTCGCCCG
AGGGAAACGTGATCATCTCCACGCGCATGCAGGCCAGTCTCTACTGCTGG
ATGAACTTTCAGAAGTTTCCCTTTGACCAGCAGTTCTGCTCCACGGTCCT
GGAGAGCTGGATGTACAACACTTCCGATTTGATTCTGGAGTGGGAGCCGC
ACACGCCCATCTCCTTTGACCCGGAAATGAGGCTCACTGAGTACAATATG
GCCCAGTTCTGGCACAACACTACGATTGTGCAGTCGGATGGGGACAATCT
GCGGCATGGAGCTTTTGCTGGTAACTATAGTTCGCTGAGCTTTACGGTCA
ATCTGAAGCGAGAAATTGGCTTCTATTTGCTCGACTATTACCTGCCCTCC
ATGATGATCGTGGCCATCTCTTGGGTGTCCTTCTGGCTTCAGGCGGACGC
ATCTCCTCCAAGGATTATGCTGGGAACCAGCACCATGTTGTCGTTCATCA
CGCTTTCCTCATCGCAGAGCAAGAACCTGCCCAAGGTGAGCTACATAAAG
GTGTCGGAGGTGTGGTTCCTGGGCTGCACCTTCTTCATCTTCGGCAGCCT
GGTGGAGTTTGCCTTTGTCAACACCATTTGGCGCCGCAAGGAGAACATTG
AGCTGAAGAAGGTCAACAGCAAGTACATCATAAAATCCACATTGACACCA
CGACCGGCCCGCCGTCAAATTGGCGGAAGTTTGAGCAACGAGTCCAGGGC
TAGATCGTGTTCCAGTTTGGACAACATTGTTTCCAGCACGGAGAGCGTGC
GCAATGGCAATGGCACTGTGAATCAGGGCTTCAACAACTATTTGACAGTG
CATCCCAATTTACCCATCATAAGAACGGAGTGCGCCGAGGCAGATACAGT
GTCTATCTGCAGTGCGCGTACGAACAACGATCATATCGTGGATGTGGACA
AGGATAAAAAGGACACGCCGCCCACCTTTACCACCATGACACCGCAGGAG
ATCGCCATGTGGATAGACCGGCGGTCGCGATTTCTTTTTCCGGCCATGTT
CCTCGCCTTCAACGCTCTGTATTGGACCTTCGTCTATGTTTTGGCAAGCT
TTCTAGACCAT
BO24362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7589-RB | 1530 | CG7589-PB | 1..1527 | 17..1543 | 7635 | 100 | Plus |
CG7589-RA | 1530 | CG7589-PA | 1..1527 | 17..1543 | 7635 | 100 | Plus |
CG6927-RA | 1575 | CG6927-PA | 715..1060 | 749..1094 | 575 | 77.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7589-RB | 2249 | CG7589-RB | 579..2107 | 15..1543 | 7645 | 100 | Plus |
CG7589-RA | 1950 | CG7589-RA | 280..1808 | 15..1543 | 7645 | 100 | Plus |
CG6927-RA | 1868 | CG6927-RA | 794..1139 | 749..1094 | 575 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17472608..17473008 | 209..609 | 2005 | 100 | Plus |
3L | 28110227 | 3L | 17473691..17474071 | 923..1303 | 1905 | 100 | Plus |
3L | 28110227 | 3L | 17474136..17474375 | 1304..1543 | 1200 | 100 | Plus |
3L | 28110227 | 3L | 17473077..17473235 | 609..767 | 795 | 100 | Plus |
3L | 28110227 | 3L | 17473290..17473447 | 767..924 | 790 | 100 | Plus |
3L | 28110227 | 3L | 17472429..17472548 | 90..209 | 600 | 100 | Plus |
X | 23542271 | X | 4907747..4908092 | 749..1094 | 575 | 77.7 | Plus |
3R | 32079331 | 3R | 31303276..31303539 | 1081..818 | 450 | 78 | Minus |
3L | 28110227 | 3L | 17470705..17470781 | 15..91 | 385 | 100 | Plus |
X | 23542271 | X | 4907468..4907616 | 470..618 | 235 | 77.2 | Plus |
3R | 32079331 | 3R | 31303774..31303839 | 583..518 | 195 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:34:53 has no hits.
BO24362.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-18 11:32:50 Download gff for
BO24362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7589-RA | 1..1527 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:13 Download gff for
BO24362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7589-RA | 282..1808 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:07 Download gff for
BO24362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7589-RA | 282..1808 | 17..1545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:07 Download gff for
BO24362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17470707..17470780 | 17..90 | 100 | -> | Plus |
3L | 17472430..17472548 | 91..209 | 100 | -> | Plus |
3L | 17472609..17473007 | 210..608 | 100 | -> | Plus |
3L | 17473077..17473235 | 609..767 | 100 | -> | Plus |
3L | 17473291..17473446 | 768..923 | 100 | -> | Plus |
3L | 17473692..17474071 | 924..1303 | 100 | -> | Plus |
3L | 17474136..17474375 | 1304..1545 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:13 Download gff for
BO24362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17465530..17465648 | 91..209 | 100 | -> | Plus |
arm_3L | 17463807..17463880 | 17..90 | 100 | -> | Plus |
arm_3L | 17465709..17466107 | 210..608 | 100 | -> | Plus |
arm_3L | 17466177..17466335 | 609..767 | 100 | -> | Plus |
arm_3L | 17466391..17466546 | 768..923 | 100 | -> | Plus |
arm_3L | 17466792..17467171 | 924..1303 | 100 | -> | Plus |
arm_3L | 17467236..17467475 | 1304..1545 | 99 | | Plus |
BO24362.pep Sequence
Translation from 16 to 1561
> BO24362.pep
MMNLHLSEIFWITLILVLSIWTSVGVKAEEEECPSMADAGSLQQTQLIQR
LTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHA
LLQLRFQDKRLAYKAFNRSDNILGQKHLSERLWLPHIFFANERESSILGT
DEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMY
NTSDLILEWEPHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAF
AGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRI
MLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAF
VNTIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGGSLSNESRARSCSS
LDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTECAEADTVSICSA
RTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNA
LYWTFVYVLASFLDH
BO24362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7589-PB | 509 | CG7589-PB | 1..509 | 1..509 | 2674 | 100 | Plus |
CG7589-PA | 509 | CG7589-PA | 1..509 | 1..509 | 2674 | 100 | Plus |
CG6927-PA | 524 | CG6927-PA | 3..524 | 11..509 | 1431 | 53.5 | Plus |
CG11340-PA | 526 | CG11340-PA | 61..526 | 33..509 | 1203 | 48.6 | Plus |
GluClalpha-PN | 463 | CG7535-PN | 32..453 | 43..504 | 458 | 27.7 | Plus |