Clone BO24362 Report

Search the DGRC for BO24362

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:243
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG7589-RA
Protein status:BO24362.pep: Imported from assembly
Sequenced Size:1561

Clone Sequence Records

BO24362.complete Sequence

1561 bp assembled on 2010-11-18

GenBank Submission: KX799286

> BO24362.complete
GAAGTTATCAGTCGACATGATGAATCTGCATCTGAGTGAAATCTTTTGGA
TCACGCTGATCTTGGTCCTCAGCATATGGACTTCAGTTGGGGTCAAAGCC
GAGGAAGAGGAATGTCCTTCAATGGCGGACGCGGGAAGCCTGCAACAGAC
CCAGCTAATCCAGCGATTAACACATGTCTGCCGCTATGATCGACTGGAAA
GACCATTTGAATACGACTCTGATGGAAAACGACTGCCCATTGTGGTGAAG
ACGCGTATTTATGTGTACTTCCTGCAGAACCTCAACTCCGACCTGCTGCA
GTTCAAGATGCACGCGCTGTTGCAGCTGCGATTTCAGGACAAGCGGCTGG
CTTACAAGGCCTTCAATCGCAGCGACAACATCCTGGGCCAGAAGCACCTG
AGCGAACGCCTCTGGCTGCCGCACATCTTCTTTGCCAACGAACGAGAGTC
CAGTATCCTGGGCACGGACGAGAAGGACGTCCTGACTTCGCTTTCGCCCG
AGGGAAACGTGATCATCTCCACGCGCATGCAGGCCAGTCTCTACTGCTGG
ATGAACTTTCAGAAGTTTCCCTTTGACCAGCAGTTCTGCTCCACGGTCCT
GGAGAGCTGGATGTACAACACTTCCGATTTGATTCTGGAGTGGGAGCCGC
ACACGCCCATCTCCTTTGACCCGGAAATGAGGCTCACTGAGTACAATATG
GCCCAGTTCTGGCACAACACTACGATTGTGCAGTCGGATGGGGACAATCT
GCGGCATGGAGCTTTTGCTGGTAACTATAGTTCGCTGAGCTTTACGGTCA
ATCTGAAGCGAGAAATTGGCTTCTATTTGCTCGACTATTACCTGCCCTCC
ATGATGATCGTGGCCATCTCTTGGGTGTCCTTCTGGCTTCAGGCGGACGC
ATCTCCTCCAAGGATTATGCTGGGAACCAGCACCATGTTGTCGTTCATCA
CGCTTTCCTCATCGCAGAGCAAGAACCTGCCCAAGGTGAGCTACATAAAG
GTGTCGGAGGTGTGGTTCCTGGGCTGCACCTTCTTCATCTTCGGCAGCCT
GGTGGAGTTTGCCTTTGTCAACACCATTTGGCGCCGCAAGGAGAACATTG
AGCTGAAGAAGGTCAACAGCAAGTACATCATAAAATCCACATTGACACCA
CGACCGGCCCGCCGTCAAATTGGCGGAAGTTTGAGCAACGAGTCCAGGGC
TAGATCGTGTTCCAGTTTGGACAACATTGTTTCCAGCACGGAGAGCGTGC
GCAATGGCAATGGCACTGTGAATCAGGGCTTCAACAACTATTTGACAGTG
CATCCCAATTTACCCATCATAAGAACGGAGTGCGCCGAGGCAGATACAGT
GTCTATCTGCAGTGCGCGTACGAACAACGATCATATCGTGGATGTGGACA
AGGATAAAAAGGACACGCCGCCCACCTTTACCACCATGACACCGCAGGAG
ATCGCCATGTGGATAGACCGGCGGTCGCGATTTCTTTTTCCGGCCATGTT
CCTCGCCTTCAACGCTCTGTATTGGACCTTCGTCTATGTTTTGGCAAGCT
TTCTAGACCAT

BO24362.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7589-RB 1530 CG7589-PB 1..1527 17..1543 7635 100 Plus
CG7589-RA 1530 CG7589-PA 1..1527 17..1543 7635 100 Plus
CG6927-RA 1575 CG6927-PA 715..1060 749..1094 575 77.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7589-RB 2249 CG7589-RB 579..2107 15..1543 7645 100 Plus
CG7589-RA 1950 CG7589-RA 280..1808 15..1543 7645 100 Plus
CG6927-RA 1868 CG6927-RA 794..1139 749..1094 575 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17472608..17473008 209..609 2005 100 Plus
3L 28110227 3L 17473691..17474071 923..1303 1905 100 Plus
3L 28110227 3L 17474136..17474375 1304..1543 1200 100 Plus
3L 28110227 3L 17473077..17473235 609..767 795 100 Plus
3L 28110227 3L 17473290..17473447 767..924 790 100 Plus
3L 28110227 3L 17472429..17472548 90..209 600 100 Plus
X 23542271 X 4907747..4908092 749..1094 575 77.7 Plus
3R 32079331 3R 31303276..31303539 1081..818 450 78 Minus
3L 28110227 3L 17470705..17470781 15..91 385 100 Plus
X 23542271 X 4907468..4907616 470..618 235 77.2 Plus
3R 32079331 3R 31303774..31303839 583..518 195 86.4 Minus
Blast to na_te.dros performed on 2014-11-26 15:34:53 has no hits.

BO24362.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-18 11:32:50 Download gff for BO24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG7589-RA 1..1527 17..1545 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:13 Download gff for BO24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG7589-RA 282..1808 17..1545 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:07 Download gff for BO24362.complete
Subject Subject Range Query Range Percent Splice Strand
CG7589-RA 282..1808 17..1545 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:07 Download gff for BO24362.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17470707..17470780 17..90 100 -> Plus
3L 17472430..17472548 91..209 100 -> Plus
3L 17472609..17473007 210..608 100 -> Plus
3L 17473077..17473235 609..767 100 -> Plus
3L 17473291..17473446 768..923 100 -> Plus
3L 17473692..17474071 924..1303 100 -> Plus
3L 17474136..17474375 1304..1545 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:13 Download gff for BO24362.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17465530..17465648 91..209 100 -> Plus
arm_3L 17463807..17463880 17..90 100 -> Plus
arm_3L 17465709..17466107 210..608 100 -> Plus
arm_3L 17466177..17466335 609..767 100 -> Plus
arm_3L 17466391..17466546 768..923 100 -> Plus
arm_3L 17466792..17467171 924..1303 100 -> Plus
arm_3L 17467236..17467475 1304..1545 99   Plus

BO24362.pep Sequence

Translation from 16 to 1561

> BO24362.pep
MMNLHLSEIFWITLILVLSIWTSVGVKAEEEECPSMADAGSLQQTQLIQR
LTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHA
LLQLRFQDKRLAYKAFNRSDNILGQKHLSERLWLPHIFFANERESSILGT
DEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMY
NTSDLILEWEPHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAF
AGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRI
MLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAF
VNTIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGGSLSNESRARSCSS
LDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTECAEADTVSICSA
RTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNA
LYWTFVYVLASFLDH

BO24362.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7589-PB 509 CG7589-PB 1..509 1..509 2674 100 Plus
CG7589-PA 509 CG7589-PA 1..509 1..509 2674 100 Plus
CG6927-PA 524 CG6927-PA 3..524 11..509 1431 53.5 Plus
CG11340-PA 526 CG11340-PA 61..526 33..509 1203 48.6 Plus
GluClalpha-PN 463 CG7535-PN 32..453 43..504 458 27.7 Plus